Search Results for "toolkit" - Page 2
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Showing 178 open source projects for "toolkit"
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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VnDP
A Vietnamese dependency parsing toolkit
VnDP is a Vietnamese dependency parsing toolkit which integrates a pre-trained parsing model and a pre-trained POS tagging model. The parsing model was trained on our VnDT Vietnamese dependency Treebank which was automatically converted from the Vietnamese constituent Treebank. See more details in VnDP's website at http://vndp.sourceforge.net/ -
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sgmweka
Weka wrapper for the SGM toolkit for text classification and modeling.
Weka wrapper for the SGM toolkit for text classification and modeling. Provides Sparse Generative Models for scalable and accurate text classification and modeling for use in high-speed and large-scale text mining. Has lower time complexity of classification than comparable software due to inference based on sparse model representation and use of an inverted index. -
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Welsh Natural Language Toolkit
WNLT is a suite of open source natural language modules for the Welsh
The project supports the Welsh Language Technology domain with a set of NLP tools that drive innovation and advance the development of sophisticated textual analysis solutions. The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words.... -
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Bamformatics
Toolkit and GUI for sequencing data analysis
The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details. -
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RDKit
Open-Source Cheminformatics and Machine Learning
...NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and similarity searches. -
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SwingStates is a library that adds state machines and a powerful canvas widget to the Java Swing user interface toolkit. SwingStates is useful to modify interaction with existing Swing widgets or to build new widgets using SwingStates' canvas.
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...The present release features GPU accelerated versions of all the background subtraction methods and morphological post processing of the object blobs with dilation and erosion filters, implemented in OpenCL. The framework was mainly designed as a toolkit for the rapid development of interactive art projects that explore dynamics of complex environments. The Scene GUI runs and compiles under Windows, Linux, and MacOS X, and is available in both 32 bit and 64 bit versions.
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The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
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Arezzo is an emulator of a Flexible Manufacturing System (FMS) usable with the "Bench4star" benchmark.
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physicsmata
API for all possible cellular automata that work same at all angles
Its strange how the "sorted pointers" normalizing makes just about any random function, as long as it connects the inputs to the outputs on some path, vibrate as some nonlinear shape of wave. This could be used as a game interface for evolvable musical instruments or fluid puzzle games. Physicsmata is similar in effect to SmoothLife but simpler and pure Java. The cellular automata API takes a function to run at each point. Its parameters are sums of screen brightness (n color dimensions are... -
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Toolkit for processing genetic data. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED, PED2RAW conversions; regions of homozygousity and other converters.
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The JINSECT toolkit is a Java-based toolkit and library that supports and demonstrates the use of n-gram graphs within Natural Language Processing applications, ranging from summarization and summary evaluation to text classification and indexing.
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TOYVision
Toolkit for the easy prototyping of hybrid games for Tabletop Devices
TOYVision is a software toolkit for the easy prototyping of Hybrid Videogames, mixing physical and virtual elements. Designers and developers of videogames, can use ToyVision to develop computer augmented hybrid games, based on manipulation of physical playing pieces and body gestures. ToyVision, supports Reactivision to comunicate with visual based Tabletop devices /http://nuigroup.com/go/lite), and Kinect sensor to track players movements ToyVision enables passive (carried out by the player) and active (carried out by the computer through the Arduino microcontroller) Any programming language can be used to develop games with toyvision, provided by implementing a TCP-IP socket. ... -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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OpenIMAJ: The Open toolkit for Intelligent Multimedia Analysis in Java. OpenIMAJ contains a large collection of pure-Java classes for analysing multimedia documents, from tools for extracting image features, to tools for analysing web pages.
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Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.
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Avalon Cheminformatics Toolkit
Avalon Toolkit for SMILES-based cheminformatics services
The Avalon Cheminformatics Toolkit contains tools to render and canonicalize SMILES and manipulate MOL file and related formats as well as structure fingerprinting. -
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jmathstudio - Java Image/Signal toolkit
Java toolkit for discrete Image and Signal processing.
JMathStudio is a Java based digital image and signal processing toolkit/library. It is simple to use, portable, light (~300 Kb), extendable and free. Full source code available at https://github.com/bhavyaajani/jmathstudio Android compatible JMathStudio is available @ https://sourceforge.net/projects/jmathstudio-android/ -
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A Java toolkit for the creation of physics simulations and 3D visualizations. Developed as part of the Technology Enabled Active Learning (TEAL) initiative at MIT.
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Coulson Plot Generator
Graphics generator for pie diagram matrix from spreadsheets
For comparative plus/minus spreadsheet data, Coulson Plot Generator application creates a multiple pie diagram, for a rapid visual comparison of subunit occupancy across a range of entities. Numbers of pies, segments, labels and colours are customisable. Creates an editable PDF from a comma separated text file. Now with zoom capability and more memory, for larger datasets. Save images in several formats including SVG. -
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
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The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
