Search Results for "next" - Page 2

cnvHiTSeq is a set of Java-based command-line tools for detecting Copy Number Variants (CNVs) using next-generation sequencing data. cnvHiTSeq uses standard BAM files as input.

CapCode is a navigation software for sailors for cruising or regatta. - Reads NMEA 183 data (instruments, GPS, AIS). Implements computation of the VMG , tracing on RNC and ENC (S-57) charts. Display the polar on the chart, future position of the ship. Weather information acquired from grib files are also displayed in the navigation view. developed as an Eclipse RCP in its versions 2.x.x

Olorin is an interactive filtering tool for next generation sequencing data coming from the study of large complex disease pedigrees.

rNA is an aligner for short reads produced by Next Generation Sequencers

MedioVis is concerned with the user-centred development of next generation visual information seeking systems for novice and nonexpert users. Various Browsing-oriented data exploration strategies are supported (overview & detail, filtering, zooming etc.)

BAMStats is a GUI desktop tool for calculating and displaying metrics to assess the success of Next Generation Sequencing mapping tools. BAMstats is written in Java and based around the Picard API.

...These services can be either human consumable (web sites, widgets and/or portlets) or machine consumable (REST, SOAP, JMS, MQ, FTP, RMI, etc) services. The adoption and usage of UDDI has made clear that it is not the answer to the dynamic discovery and consumption model. This Service-Registry project targets the next generation of application and how they will both publish and consume run-time service and propogate registry entries across a network of registries. Further, other registries loose value over time as they eventually get filled with garbage that makes it difficult to discern good entries from defunct entries. Service-Registry is designed to be "self cleaning" keeping the usefulness of registry high. ...

PileLine (Pileup pipeLine) is a toolkit for efficient handling of genomic position (GP) files, produced by next-generation sequencing experiments. It is designed to be memory efficient by performing on-disk operations over sorted GP files.

PAICE is a rapid bioinformatics pathway visualization tool for KEGG-compatible accessions derived from Illumina Solexa next-gen and Affymetrix datasets. It colors KEGG pathways while appreciating detection-calls and duplicate gene copies.

CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.

A bioinformatics tool for the annotation and tag-counting of next-gen Illumina Solexa datasets. TASE works with CASAVA 1.0 builds, providing annotation, tag counts and visualization in a rapid manner.

SRMA is a post-alignment micro re-aligner for next-generation high throughput sequencing data.

HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.

Mostly academic research Project about next generation computing (Software only), trying to find new ideas and solutions how computers can work in the future using technologies like voice recognition and synthesisation. Everyone is invited to join in

A map/reduce based application for mapping short reads generated by the next-generation sequencing machines.

EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)

Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates coverage. ...

Utility for tracking cycles of menstruation and for prediction of next period's date. Also you can use this to keep encrypted photos in nice gallery.

...It is a problem solver software which uses evolutionary computing methods. When vkas is run, it creates a population of chromosomes at random. This population is then genetically modified and next population is generated. Each population is subjected to fitness calculation and if a suitable answer chromosome is found then vkas stops and the answer is printed. If a suitable answer is not found then the program stops after specified max generations are over.

A pure java user interface framework for building both web and gui applications, heavily inspired by the NeXT and OpenStep APIs. Includes clean-room implementations of parts of the WebObjects and JavaClient frameworks plus the Foundation classes.

This project consists of modifications to the i2b2 core project management cell in order to increase the security of the authentication information passed to the client. These changes are being considered for the next core release.

The MaXX Interactive Desktop aims at bringing the next generation high performance desktop to graphics professionals. MaXX Desktop is also a workstation environment for power hungry production class applications used by FX studios, oil & gaz & visualization.

Given a String , returns the next logically sequential string defined by a rule. The basic rule is, given a sequence of alphabets, it checks the string and returns a new string with one or more alteration. javadocs and source codes available inside.

Interlogy - next generation knowledge storage and prezentation system. Gives wide functionality for knwoledge evaluation. Interlogy is the same as forum, wiki, chat, socialnetwork, but all together.