Showing 7 open source projects for "maq"

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  • 1

    Genobuntu

    Genobuntu Package for Next Generation Sequencing

    Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools. Commonly used biological software and example script files for different assembly pipelines have also been provided, where the example script files can be updated to suit one’s experimental needs. Genobuntu attempts to reduce the amount of time and energy needed to build ...
    Downloads: 3 This Week
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  • 2

    mrMAQ

    mrMAQ is a MapReduce implementation of MAQ short read aligner

    mrMAQ is a MapReduce implementation of MAQ short read aligner. It's composed of a few classes that implement map and reduce interfaces, plus an optional combiner.
    Downloads: 0 This Week
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  • 3
    Cloud-MAQ is an enhancement over MAQ.
    Downloads: 0 This Week
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  • 4
    Maq is a set of programs that map and assemble fixed-length Solexa/SOLiD reads in a fast and accurate way.
    Downloads: 6 This Week
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  • 5
    Suite of software tools for transcription factor binding site search, gene annotation, and orthology filtering. Some tools in the CisOrtho package are required along with MAQ for use in MAQGene.
    Downloads: 0 This Week
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  • 6
    Web-based user interface for MAQ (Mapping and Assembly with Qualities), an Illumina / Solexa Deep Sequencing Reads (fastq format) mapping software. MAQGene classifies each found mutation based on its canonically predicted effect on the coding sequence.
    Downloads: 0 This Week
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  • 7
    A perl script that converts Illumina qseq files into Phred fastq files for use in Maq. Originally written by Tyler Bachman from UC Riverside, adapted by Eugene Goltsman. Freely available under the terms of GNU GPLv3.
    Downloads: 0 This Week
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