Search Results for "input-leap" - Page 2
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Showing 124 open source projects for "input-leap"
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JBioFramework
Growing suite of proteomics simulations for educational purposes
...It is written in the Java programming language and will run on any and all systems that have the JVM installed. As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please don't hesitate to review the software below or email Paul Craig [pac8612@rit.edu] with larger descriptions/bugs/feature ideas. Our next scheduled release will contain (in addition to 2DE and MassSpec) a 1D Electrophoresis simulation as well as a tab containing ChemAxon's MarvinSketch [http://www.chemaxon.com/products/marvin/] along with some improved functionality. ... -
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GeoWE
GeoData Web Editing [core SIG Web]
GeoWE is an open free GIS platform oriented to advanced geodata editing on The Web. The main aim of this initiative is to move the strenghts usually linked to desktop GIS to a web environment, by leveraging open source technologies. This is a free software project that is part of the open source GIS world, and it is developed in Java using the Google Web Toolkit framework. The geowe-core is being developed using the following technologies: - GWT (Google Web Toolkit) - JBoss... -
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ICE (Interval Calculator for Engineer)
Interval Calculator for Engineer
ICE is a simple mathematical calculator with very useful shortcuts for Engineer: works natively with tolerance, can run Monte Carlo analysis, uses engineer notation, includes most of the day by day functions used by engineers. -
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Ship Lock Scheduling
Scheduling lockages at ship locks with several parallel lock chambers
This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding... -
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CDSS for Allergy-Diagnosis
A clinical Decision Support System for Diagnosis of Allergic Rhinitis
...CDSS with rule based classification approaches, aid junior doctors and clinicians to diagnose and make reliable decisions. The results of an intradermal skin test is the input to the CDSS. The System predicts the presence or absence of ALLERGIC RHINITIS. The system is tailored to suit to the common allergens (inhalents and ingestants) prevalent in Chennai, South India. Intradermal Skin Test(IDST)data were collected from 872 patients who visited the Good Samaritan Kilpauk Lab and Allergy Testing Centre, Chennai, Tamilnadu, India. -
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EasyModbusTCP Server Simulator .NET/JAVA
Modbus TCP/UDP Server Simulator and Modbus RTU Slave Simulator
...See Library and source code: www.easymodbustcp.net For Connection to Modbus-TCP, Modbus-UDP clients, and Modbus RTU Master. Server listens at port 502 (can be changed). Shows also Protocol informations. Allows Multiple connections Digital Inputs; Coils; Input Registers and Holding Registers can be viewed and changed in a table-view Version V2.5: - Upgrade Library with new functions Version V1.1: - Asynchronous Reading and Writing to Speed up Server Version V1.0: - Bugfixes Version V0.96: - Bugfix - Server Simulator available as Java-Version Version V0.95: - Modbus UDP supported Version V0.94: - Some Bugfixes Version V0.93: - Added Function code 16 (Write Multiple Registers) - Some measures to speed up Modbus-Server - DLL-Library for .NET implementations added Version V0.92: - Added Function code 15 (Write Multiple Coils) -
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ICon (Input Configurator) is a Java-based system for managing input devices and building advanced interaction techniques using a dataflow model. It contains a runtime engine, a rich library of input devices, several processing modules and a visual editor.
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CanReg5 (moved to Github)
Canreg5 is a software package for population based cancer registries
Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. -
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BioSARN
BioSARN is an environmental niche model refinement tool
...This is a Java™ Desktop MicroSoft Windows Application with a simple GUI. Preferably BioSARN should be used with 64-bit Java and a substantial RAM as the application reads input files into memory to minimize compute times. -
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Logic Calculator
A Calculator to perform logical operations
The Logic Calculator is an application useful to perform logical operations. It has three modes: (1) Evaluation of logic formulae: In this mode we have the basic boolean operations (negation, conjunction, disjunction, conditional and biconditional) so the user can insert the logic formula and the Logic Calculator displays the truth table along with the models of the formula. (2) Logical entailment: In this mode the user can insert a number of premises followed by a number of... -
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KneeTex is an open–source, stand–alone application for information extraction from narrative reports that describe an MRI scan of the knee. Given an MRI report as input, the system outputs the corresponding clinical findings in the form of JavaScript Object Notation objects. The extracted information is mapped onto TRAK, an ontology that formally models knowledge relevant for the rehabilitation of knee conditions. As a result, formally structured and coded information allows for complex searches to be conducted efficiently over the original MRI reports, thereby effectively supporting epidemiologic studies of knee conditions.
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Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand proteins' : 1. Secondary structures 2. Conformational arrangements 3. Surface interactions -
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CONMAP
Geobody connectivity analysis tool in geosciences. New version: 2.0
CONMAP is a console program to aid in geobody connection analysis in geosciences. It accepts input and outpts results in GEO-EAS (GSLIB) format for easy interoperability with most geoscience softwares. To get help in usage, simply run the program without arguments. CONMAP is a Java 1.7 program. Open a command prompt, go to the directory where you download CONMAP.jar and enter the command "java -jar CONMAP.jar <arguments>" (without quotation marks) to run the program. ... -
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GESPA
Accurately predicts disease association of single nucleotide mutations
GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are... -
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TE-locate
a tool for calling transposons
TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then. -
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Stemmer Gujarati
Offline stemmer for Gujarati , which is one of 22 Indian languages.
...There has been lot of significant work in the development and evaluation of stemmer for non-Indian languages, but very less or no significant work has been done on Indian front especially for Gujarati language.The code of this stemmer is based on algorithm designed under guidance of Prof. Nikita Desai, India. It takes input file of type .txt containing Gujarati text encoded as UTF-8 and then removes stop words which are unessential. After processing rest of the words, it outputs corresponding file containing all stem words plus other details. -
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Mitzuli
The open, easy-to-use and powerful translator app for Android
Mitzuli is an open source translator app for Android featuring a full offline mode, voice input (ASR), camera input (OCR), voice output (TTS), and more! -
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Text Expander, Inverse summarizer
Expand text, inverse summarizer
...This program is a data-miner and a knowledge-miner. It does exactly the opposite of what the text summarizers do. A text summarizer produces a shortened text given some text as an input. An inverse summarizer takes the shortened input, a similar or a same text and does the process in reverse. This results in an expanded text. It can be used with any text or notes that have the knowledge gaps. It is a great aid to any creative work and it simply pin-points to data that may be of some relevance. How to run this program? ... -
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TUIT
Taxonomic Unit Identification Tool
For the installation instructions please see Wiki page: https://sourceforge.net/p/tuit/wiki/ IMPORTANT: since version 1.0.4.0 TUIT allows to select RDP-like formatted output to improve out of the box compatability with tools, that assume RDP-formatted input. A new field has been added to the properties.xml, please make sure to update it to contain <OutputFormat format="tuit"/> or <OutputFormat format="rdp"/> in the <BLASTNParameters> section. Read our paper in Biotechniques: http://www.ncbi.nlm.nih.gov/pubmed/24502797 Taxonomic Unit Identification Tool (TUIT) is a free open source platform-independent software, designed specifically to facilitate taxonomic annotation of nucleotide sequences via BLAST homology search against the NCBI databases. ... -
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
...Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo -
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µic is a modelling engine for simulations of microstructural development. It takes localied behaviours as input from the user and integrates the global behaviour, with the calculation of all interactions as required by the application.
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Mechaglot, Calculate Semantic Similarity
Calculate semantic similarity for any human and human-like languages
...This is Alpha release, expect many things to improve, including the algorithms. PLEASE GO TO BROWSE ALL FILES TO READ A FULL DESCRIPTION. The goal of this project is simple: Input two sentences of the same language, and obtain the number (from 0 to 1) denoting the similarity between the inputted sentences, according to semantic categories. This project models my previous project: https://sourceforge.net/projects/semantics/ Difference is, this project does not use any database and computes any Strings as an input. ... -
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LGML
LGPL GML parser
...The aim is to parse a GML document or fragment in order to get a WKT output. 2D and 3D inputs are both handled, but it is not permitted to have mixed geometries. The caller can choose if the input coordinates are parsed as X, Y, Z (if present) order, or Y, X, Z (if present) order. The willing of the project is to be a starting point useful for developers that need to parse GML objects in order to use them, for example, in the context of OGC catalogue projects. The library is compiled using Java 1.5 or 1.6. For now, supported inputs are: LineString, MultiLineString, MultiPoint, MultiPolygon, Point, Polygon, MultiSurface (in an experimental way: the only child object handled is Polygon). ... -
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It's a program that plots Bode diagrams with an excellent precision. In this new version it's very easy to provide the function to plot thanks to a simply graphic interface in style "what you see is what you got". A smart output window allows to plot more than one graph at the same time, and easily compare them. The plotted graphs can be exported as images, in various format. Language supported: italian. Next version probably will include other languages; certainly english will be...
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Athus
Manage, merge, filter and convert population genetics data
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO, Illumina call files) * work with genetic maps ...
