Search Results for "development tools" - Page 2
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Showing 111 open source projects for "development tools"
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Welsh Natural Language Toolkit
WNLT is a suite of open source natural language modules for the Welsh
The project supports the Welsh Language Technology domain with a set of NLP tools that drive innovation and advance the development of sophisticated textual analysis solutions. The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words. ... -
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NiCE
Modeling and Simulation made NiCE!
...The new project page is www.eclipse.org/ice and the updated source code is at www.github.com/eclipse/ice . Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes. -
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FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
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The bflow* Toolbox is an open source tool kit for business process management. The objective of bflow* is to explore new ways and scenarios for the development and use of modelling tools.
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Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand... -
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merlin is an user-friendly Java application that performs the reconstruction of genome-scale metabolic models for any organism that has its genome sequenced. It performs several steps of the reconstruction process, including the functional genomic annotations of the whole genome. Moreover, merlin includes tools for the identification and annotation of transport proteins encoding genes, as well as the generation of transport reactions for such carriers. Also, merlin includes tools for the...
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MOEA Framework
A Free and Open Source Java Framework for Multiobjective Optimization
The MOEA Framework is a free and open source Java library for developing and experimenting with multiobjective evolutionary algorithms (MOEAs) and other general-purpose multiobjective optimization algorithms. The MOEA Framework supports genetic algorithms, differential evolution, particle swarm optimization, genetic programming, grammatical evolution, and more. A number of algorithms are provided out-of-the-box, including NSGA-II, NSGA-III, ε-MOEA, GDE3 and MOEA/D. In addition, the MOEA... -
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Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877,...
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Stemmer Gujarati
Offline stemmer for Gujarati , which is one of 22 Indian languages.
...Stemming is a process in which affixes are removed form the root word (stem). It relates morphological variant words to corresponding common root. For example "પ્રતિઉપયોગી" is word which has stem " ઉપયોગ". Stemmers are language specific tools. The design of a stemming algorithm requires a significant level of linguistic expertise. There has been lot of significant work in the development and evaluation of stemmer for non-Indian languages, but very less or no significant work has been done on Indian front especially for Gujarati language.The code of this stemmer is based on algorithm designed under guidance of Prof. ... -
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IMG2GSLIB
Converts images to GSLIB grids -NEW: 3D support.
IMG2GSLIB is a small command line tool that converts images to grids into GEO-EAS format readable by geoscientific software such as GSLIB, SGeMS, Isatis, Gocad, Petrel, etc. It now can output 3D volumes from image stacking. The ASCII result is sent to stdout, so you can redirect it using the > operator if you want to save it to a file. Run java -jar IMG2GSLIB.jar without arguments to get help on usage. Requirements: -Java 1.7 -
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grepp
An ultimate text-analysing tool
A command line tool for text file analyis, filtering, splitting and reporting. Runs under Java (1.5+), supports plugins written in Groovy. Has nix and win batch files in distributions. -
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picard
A set of tools for working with high-throughput sequencing data
A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team -
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The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
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A consumer API that can process the response of an ontology evaluation web service provider.
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PHDL
An HDL alternative to PCB graphical schematic capture tools.
PHDL is an HDL that functions as an alternative to mainstream graphical schematic capture tools. The language is compiled into a pcb netlist which can then be imported into a layout tool. We are currently on version 2.1 of the tool. We have created an eclipse plugin version of the tool as well as a standalone command-line based version. Both function identically and output a netlist that can be imported into a pcb layout tool. VHDL revolutionized how FPGA designs and digital logic... -
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JBernstein
JBernstein: Exploration techniques for non-linear constraint checking
JBernstein is a tool implemented in Java that enables to check whether a polynomial constraint holds for all variables within their domain. It is mainly used in the verification or synthesis of cyber-physical systems where the system model is nonlinear. The tool also supports specifications in assume-guarantee style. The underlying algorithm is based on a translation to Bernstein polynomials, and several optimization techniques are implemented to ensure efficiency. Concerning performance,... -
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JinnIde is a plugin that allows using Jinni Prolog, now also hosted here on this site (with open source license!), within the confines of an IDE integrated in JEdit.
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OpenME Interface
simple event-based plugin interface to open up hardwired software
News: since 2015 we continue all related developments within Collective Knowledge Framework: http://github.com/ctuning/ck/wiki Simple and universal event-based plugin framework and interface to open up hardwared black-box software (tools, application), make them interactive through external plugins, and connect them with other higher-level tools such as Collective Mind. For example, it is used to open up compilers (GCC, LLVM, Open64) for external tuning of optimization of internal... -
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SMLEditor
Prototype editor for the SDEM Mapping Language
The Gateways Team of the Live-Virtual-Constructive Architecture Roadmap Implementation (LVCAR-I) effort is developing a set of tools that will support the gateway community. One of these tools is the Simulation Data Exchange Model (SDEM) Mapping Language (SML) Editor. The tool provides the ability to import two SDEMs in their native language and subsequently view the entities that need to be mapped between the two SDEMs. The SDEM Editor also allows the user to create these mappings and... -
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Bayesian Network tools in Java (BNJ) is an open-source suite of software tools for research and development using graphical models of probability. It is published by the Kansas State University Laboratory for Knowledge Discovery in Databases (KDD).
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HLAgile
Tools for distributed simulation
This project is devoted to producing tools to help HLA developers write software that is less tied to vendor specific libraries and/or particular FOMs. -
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openSCADA
openSCADA® is an open source SCADA system written in JAVA
...It is platform independent and based on a modern system design that provides security and flexibility at the same time. openSCADA is flexible. It is not an out of the box solution, but a set of tools that can be combined in many different ways. It provides development libraries, interface applications, mass configuration tools, front-end and back-end applications. openSCADA is ready to rock. It is used 24/7 in several installations around this world. openSCADA is supported. So if you prefer a fully supported, out of the box instead of a “build it yourself” solution you can contact IBH SYSTEMS GmbH and let us do the job. ... -
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CUO
Codon Usage Optimizer
CUO is a GUI-based multiplatform software written in Java. It is open source and built with a user/developer-friendly structure. The main function of the software at the current development stage is to optimize genes to be transformed into the Chlamydomonas reinhardtii chloroplast genome although it can be used to optimize genes into other hosts as well. The main tool in CUO, Moptimizer, introduces a semi-automatic way of gene optimization which provides more flexibility and accuracy during... -
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ipmems
Real-time data acquisition and visualization software
Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module. -
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A very simple command line tool to convert OSM files to Shapefiles. Written in Java. Think of it as a self-study project.
