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The CheckCML project is a collection of modules for the production and checking of chemical experimental data represented as CML. The core CheckCML library provides classes for the checking process; tools such as OscarData allow for the production of CML
The ExactFDR software package is an improvement of
permutation-based False Discovery Rate (FDR) estimation methods
that takes advantage from exact p-value computations for analyzing Genome-wide association studies data
MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
Java source to C source translator, which allows to write MCU programs in Java. Now AVR are supported, others can be added. Convenient Java methods instead of manual register handling.
Omnigraphs are a formal extension of hypergraphs with the ability of edges to connect to multiple nodes and edges. This project hosts the Ogre compilers.
This project about providing run-time support for developing Decentralized Autonomic Computing systems (Eclipse Innovation Grand). Currently the project contains a automatic guided vehicle (AGV) simulator and an editor and visualisation as eclipse plugin
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SystemJ is a new language dedicated to the easy development of Reactive HDL's. Based on JAVA it is platform independant and gives the ease of development that accompanies java.
JavArch is a simple gate-level and above simulator. It is written in Java so it is portable and uses Java's builtin event-driven mechanisms to reflect how electronics actually work.
JUndo is a declarative object-oriented programming language with functional, and intensional programming characteristics. Applications include multi-level undo and sophisticated error recovery. See http://verdantium.blogspot.com/
Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.
Equivalence checking for two netlists of ORCAD schematic designs. Check out whether two netlists may generate the idendical PCB in later design stage, even if they are derived from different design procedures with different part-ref and siganl-name.
Google() meets the Matrix. Red Piranha combines Lucene (Searching Ability), XML-RDF (ability to learn), Tomcat (for P2P Power) and Spring (Ease of use) to not only let you find anything, anywhere, but to actually understand what you are looking for.
VxmlSurfer is a modular, multi-platform, extensible VoiceXML 2.0 interpreter, geared to Web browsing as opposed to telephony. VxmlSurfer is currently used as a user interface for the HearSay non-visual Web browser.
weatherNow is an engine built in Java to retrieve and parse aviation messages, including METAR, NOTAM, TAF, AIRMET or any other that becomes available.
Open Office Server Daemon based on older daemon written in python (oood).
Open Office is unstable as a server (memory leaks, not multithreaded, ...), this daemon makes it working in long-term without having to change anything in your code.
Tool to extract data from a GlobalSat DG-100 GPS data logger and store the data in GPX format. It also can send configuration data to the device, delete stored data and switch the device to GPS-mouse mode.
Java Expert Rule Based Inference Language. Jerbil is an open source rule processing engine written in Java. Currently Jerbil supports a full set of processing functions with text-based and XML interfaces; a Java interface is planned.
This project is an open source implementation of axial space syntax software. Space syntax is an analytic urban theory used by researchers to understand elements of the structural aspects of design and how these effect pedestrians and social interaction.