Search Results for "open-shell" - Page 12
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Showing 4550 open source projects for "open-shell"
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ebfformat
An Efficient Binary data Format
EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code... -
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LoopMatcher
Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor... -
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Leseratte is a Java parser for German written language. Currently, it contains a German lexicon (based on the Wiktionary), inflexion rules, a grammar and a parser. (Semantics component planned.) Usable as a Java library, also provides a graphical UI.
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through... -
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We are developing data standards and software tools that implement these standards to develop a systemic approach to modeling, capturing, analyzing and disseminating flow cytometry data.
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Poli
An easy-to-use BI server built for SQL lovers. Power data analysis
An easy-to-use BI server built for SQL lovers. Power data analysis in SQL and gain faster business insights. Platform independent web application. Single JAR file + Single SQLite DB file. Get up and running in 5 minutes. PostgreSQL, Oracle, SQL Server, MySQL, Elasticsearch... You name it. No ETLs, no generated SQL, polish your own SQL query to transform data. Pixel-perfect positioning + Drag'n'Drop support to customize the reports and charts in your own way. Utilize the power of dynamic SQL... -
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The most recent distribution of MyOpenLab can be downloaded from: myopenlab.org Follow us on Facebook as MyOpenLab Colombia https://www.facebook.com/myopenlabcolombia/ Subscribe, like and watch our MyOpenLab videos: https://www.youtube.com/channel/UCet6UPnaHKGjtbytJHIf2jQ Thanks!
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Combinatorial Game Suite
A computer algebra system for research in combinatorial game theory.
STARTING WITH VERSION 2.0, CGSUITE HAS MOVED TO GITHUB. The latest version can be found at the CGSuite homepage: https://www.cgsuite.org/ This page is preserved for archival purposes only and is no longer being maintained. -
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FidoCadJ
Simple and intuitive 2D vector drawing for electronics and not only.
A multiplatform vector drawing program with a complete library of electronic symbols. Schematics and drawings are stored in a very compact text format. There is no netlist concept behind the drawings (so no simulation, and this is a choice) but this allows a great graphical flexibility and ease of use, making FidoCadJ the perfect tool for exchange sketches in forum and newsgroup discussions with a few clicks. Drawings can be exported in several graphic formats, such as pdf. Follow the... -
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Jafama
A (Strict)FastMath class with 1e-15ish accuracy.
Jafama (Java Fast Math) consists of fast - but not sloppy - counterparts of java.lang.Math treatments, plus additional ones. They are usually about 2-4 (up to 15) times faster, with about 1e-15 accuracy, and handle special cases (NaN, etc.). Since version 2.1, a StrictFastMath class is also provided. It is a strictfp version of FastMath (and not a fast version of StrictMath): for a same version of this library, its methods always return a same result for same arguments, which might not... -
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Java library of statistical distribution functions. Classes implement the PDF, CDF, and (usually) quantile and random variate generation for many common distributions.
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IntEnz is the name for the Integrated relational Enzyme database. IntEnz contains data curated and approved by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB).
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A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences, multiple sequence alignments and phylogenetic trees.
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BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. Models presented are annotated and linked to relevant data resources and are available in various format
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JavaSeis.org: Java based software for processing and storing petroleum industry seismic data.
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GeoHammerToolbox
Digital Signal Processing and Wave Field Propagation
Integration of multithread calculation and 2D/3D visualization -
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Crystalsim - XRD hkl simulation
X-ray diffraction (XRD) analysis for hkl simulation of any crystal.
Crystalsim is a simple freeware program with a neat graphical user interface for X-ray diffraction (XRD) data analysis . It can simulates all possible {hkl} planes data for the selected crystal. Crystallographic Information File (.cif) can also be used. Analyze both powder diffraction and single crystal data . Indexed at International Union of Crystallography (IUCR). Crystalline lattice parameters such as ‘a’, ‘b’, ‘c’ as well as interfacial angles such as alpha, beta,... -
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ASR for Medical Reporting
Automatic speech recognition system for medical reporting in spanish.
This is a functional prototype of automatic speech recognition system for medical reporting in Spanish using CMU Sphinx4 ASR toolkit. This ASR use pre-trained acoustic model and context dependent language model in nuclear medicine diagnostics. -
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Autshumato MTWS
Autshumato Machine Translation Web Service
Web service providing access to the Autshumato Machine Translation (MT) and other Moses Statistical MT systems. Functionality includes: - Automatic sentence, document, web page translation. - Improvements for translations. - Reviewer requests and interface to review improvements - Connection to the latest version of the Autshumato ITE, Post Edits done on inserted automatic translations are automatically submitted to the MTWS. - Administration interface to add users, reviewers and MT... -
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Neuroph is lightweight Java Neural Network Framework which can be used to develop common neural network architectures. Small number of basic classes which correspond to basic NN concepts, and GUI editor makes it easy to learn and use.
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Strukturformel-Zeichner
A Tool to draw carbon compounds based on the IUPAC-description
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NumericalChameleon
a free cross platform precise unit converter, supports 6000+ units
The NumericalChameleon is a free, open source, cross platform software in order to convert units. It converts numbers with a precision of up to 1000 significant figures. It supports more than 6000 units in 94 categories. It has been localized in 10 languages. -
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Distributed Generic Information Retrieval (DiGIR) - developing and testing a protocol for single point access to distributed data sources. Based on HTTP, XML, and UDDI.
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HL7 Inspector
HL7 Inspector is a tool for managing HL7 messages
The HL7 Inspector project has moved to Bitbucket. https://bitbucket.org/crambow/hl7inspector All new releases can be found there. The web-based version can still be found at www.hl7inspector.com -
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yad2xx
Yet Another JNI-D2XX Interface Project
A Java Native Interface (JNI) library suitable for communicating with a range of USB interface chips from FTDI via the D2XX driver. It currently supports OS X 10.10+ and Windows 7/8 x64. On OS X, the 64 bit JVM is supported. On Windows, support is limited to the 64 bit JVM (Java 1.8 is now 64 bit). Version 1.0 --------------------------------- - Java 8 - SPI support and sample (via MPSSE)
