Showing 1168 open source projects for "java project with source code"

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  • 1
    Analyze My Genes

    Analyze My Genes

    Compare gene analysis results from 23andme with the human genome

    This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time.
    Downloads: 0 This Week
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  • 2
    The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
    Downloads: 10 This Week
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  • 3
    ChannelFinder Directory Service
    Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
    Downloads: 0 This Week
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  • 4
    OpenOrienteering

    OpenOrienteering

    Former project page

    See https://www.openorienteering.org/apps/mapper/
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    Downloads: 14 This Week
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    Photo and Video Editing APIs and SDKs

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  • 5

    JMapViewer

    Java Swing component for integrating OSM maps into your Java app.

    This project offers the Mavenized format of the official "JMapViewer" project. Official project code on: https://trac.openstreetmap.org/browser/subversion/applications/viewer/jmapviewer?order=name Please, note that no development is performed in this SVN, just contains Maven artifact of official releases (starting from 1.14 version) If you want to give it a try, download code and run the Demo: > mvn compile package > cd target > java -jar JMapViewer-1.14.1-Demo.jar
    Downloads: 5 This Week
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  • 6
    CRAFT HPC Floating-point Analysis

    CRAFT HPC Floating-point Analysis

    CRAFT: Configurable Runtime Analysis for Floating-point Tuning

    CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft
    Downloads: 0 This Week
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  • 7
    openModeller is a complete C++ framework for species potential distribution modelling. The project also includes a graphical user interface, a web service interface and an API for Python.
    Downloads: 6 This Week
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  • 8
    Open XAL

    Open XAL

    Accelerator Physics Framework

    Open XAL is an open source development environment used for creating accelerator physics applications, scripts and services. This project is a collaboration among SNS, CSNS, ESS, GANIL, TRIUMF and FRIB.
    Downloads: 0 This Week
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  • 9
    ... code repository, it is only a publishing/readonly code repository for this project. The working repository is actually a gerrit repository at https://source.oscartools.org:8080, once commits are reviewed and approved and merged into the trunk, they are automatically mirrored to the sourceforge git repository (usually with in seconds). SourceForge GIT issues have been resolved and all source code repositories are syncing with our gerrit server again (2013-05-08).
    Downloads: 2 This Week
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    No-Nonsense Code-to-Cloud Security for Devs | Aikido

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  • 10

    physicsmata

    API for all possible cellular automata that work same at all angles

    Its strange how the "sorted pointers" normalizing makes just about any random function, as long as it connects the inputs to the outputs on some path, vibrate as some nonlinear shape of wave. This could be used as a game interface for evolvable musical instruments or fluid puzzle games. Physicsmata is similar in effect to SmoothLife but simpler and pure Java. The cellular automata API takes a function to run at each point. Its parameters are sums of screen brightness (n color dimensions...
    Downloads: 0 This Week
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  • 11
    A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.
    Downloads: 0 This Week
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  • 12
    Systems Biology Simulation Core Library

    Systems Biology Simulation Core Library

    Accurate and efficient Java library that simulates biological models

    This project has been moved to https://github.com/draeger-lab/SBSCL.
    Downloads: 0 This Week
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  • 13

    kovacs.util (Java numerical classes)

    !!! moved to jnum subproject under crush-software !!!

    This project has be renamed to jnum and moved under the crush-software project. No further SVN commits here...
    Downloads: 0 This Week
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  • 14
    Micro-agents
    An efficient Java-based Multi-agent Platform implementing the micro-agent concept µ² offering network support and multiple agent implementation languages. Detailed instructions and documentation can be found under http://www.micro-agents.net. This project has been moved to Github.
    Downloads: 0 This Week
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  • 15

    nmea4j

    NMEA libary for java (protocol of GPS devices)

    The aim of this project is to create a full utility suite for NMEA protocols (best known from GPS devices). First goal is a full implemenation of the NMEA 0183 protocol 3.0 (without proprietary extensions). The library provides parsers for NMEA sentences, gpsd-like network daemons and data generators for simulation and testing. This allows advanced sensor handling from cellphones/tablets/laptops with GPS up to vehicles/ships with NMEA sensors on board.
    Downloads: 0 This Week
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  • 16
    OptFerm

    OptFerm

    A computational platform to study fermentation processes

    OptFerm is a computational platform for the simulation and optimization of fermentation processes. The aim of this project is to offer a platform-independent, user-friendly, open-source and extensible environment for Bioengineering process optimization that can be used to increase productivity. This tool is focused in optimizing a feeding trajectory to be fed into a fed-batch bioreactor and to calculate the best concentration of nutrients to initiate the fermentation. Also, contains...
    Downloads: 0 This Week
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  • 17
    FREJ
    FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
    Downloads: 0 This Week
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  • 18
    Universal Java Matrix Package

    Universal Java Matrix Package

    sparse and dense matrix, linear algebra, visualization, big data

    The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large...
    Downloads: 1 This Week
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  • 19

    FPF_predict

    Fine Particle Fraction (FPF) predictor

    Application implements models described by classical mathematical equation for in vitro deposition prediction based on characteristics of formulation and assay conditions. This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012. Published article: https://www.dovepress.com/empirical-modeling-of-the-fine-particle-fraction-fornbspcarrier-based--peer-reviewed-fulltext-article-IJN
    Downloads: 0 This Week
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  • 20
    ASTRA-project
    Supporting software tools for mediated interpersonal awareness. Service oriented architecture, tools and applications that support communities to appropriate Pervasive Awareness applications. See http://www.astra-project.net/ for details.
    Downloads: 0 This Week
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  • 21
    The MCISB Project contains software solutions developed in the Manchester Centre for Integrative Systems Biology, University of Manchester.
    Downloads: 0 This Week
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  • 22
    Arduino Simulator
    Arduino Simulator is a software developed to create simulation for Arduino micro-controller. The interface of the main window is straightforward and intuitive, as it is divided into two tabs called Code and Wiring, each with its specific functionality. Arduino Simulator features touch sensor, LED blinking, 4x4 Keypad, One Digit Seven Segment Display, Serial Monitor to display the output of the code, Wiring to show how to make wiring, Hardware requirements that list the components...
    Downloads: 7 This Week
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  • 23

    S2O

    Converting IBM SPSS files to CDISC ODM

    This tool can be used to convert data collections based on IBM SPSS Statistics to the data standard for definition and exchange of clinical trials: CDISC ODM (Operational Data Model). Possible use-cases: - A project is running out of funding and scientific data collection should be performed in free available/open-source data capture systems - Advantages of reliable EDC systems like: Data security (role/right management), backup infrastructure, support of the entire clinical trial lifecycle...
    Downloads: 0 This Week
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  • 24
    The Protein Similarity Network

    The Protein Similarity Network

    Human protein similarity network used to predict drug safety.

    This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do...
    Downloads: 0 This Week
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  • 25
    Mutation Mapper
    PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/MutationMapper) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/MutationMapper/releases/latest). Predict functional consequences of mutations identified from sanger sequencing.
    Downloads: 0 This Week
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