Search Results for "atom-project" - Page 10
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Showing 983 open source projects for "atom-project"
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...This application provides a web-based tool to design plasmids, artificial gene networks, and other synthetic genetic systems composed of standard genetic parts. It includes a parts management system, a rule-based design tool, and a simulation engine. This project has morphed into a SaaS model. The open source code is no longer maintained.
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A project to host code developed for the Microtransat challenge, a race between autonomous sailing robots. This project is intended for both supporting code such as tracking systems and robot control systems or parts of robot control systems.
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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Coulson Plot Generator
Graphics generator for pie diagram matrix from spreadsheets
For comparative plus/minus spreadsheet data, Coulson Plot Generator application creates a multiple pie diagram, for a rapid visual comparison of subunit occupancy across a range of entities. Numbers of pies, segments, labels and colours are customisable. Creates an editable PDF from a comma separated text file. Now with zoom capability and more memory, for larger datasets. Save images in several formats including SVG. -
Host LLMs in Production With On-Demand GPUsDeploy your model, get an endpoint, pay only for compute time. No GPU provisioning or infrastructure management required.
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Deem
Analyze time-course data with significance tests, clustering, modeling
...The application is a cross-platform desktop app with a simple GUI and is fully functional currently. The app was and is developed at the University of Rochester (http://cbim.urmc.rochester.edu) under the GPL 3.0 license. This is a fork of that project. -
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Mushrooms
See you and your friends on a map
(Former project name was Geo5.) It was never easier to share your position with friends. Just open http://jfellow.net/geo5/ and see you and your friends on a map. (http://jfellow.net/geo5/ is a test server. You can download and install your own server. It's open source.) - Build groups, all group members see each other automatically -
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GeoGit
Geospatial Distributed Version Control System
NOTE: this project has been renamed as GeoGig. Use this URL to get to the GeoGig downloads: https://sourceforge.net/p/geogig Welcome to the GeoGit project, exploring the use of distributed management of spatial data. GeoGit draws inspiration from Git, but adapts its core concepts to handle versioning of geospatial data. Users are able to import raw geospatial data (currently from Shapefiles, PostGIS or SpatiaLite) in to a repository where every change to the data is tracked. ... -
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Energistics Transfer Protocol
Real-time Low Latency High-Frequency data streaming API
This project contains the working artifacts for the development of the Energistics Transfer Protocol. There is NO Wiki. To review documentation, clone or download the repository and look in the documentation directory. You can access on line using the [Browse Code] button. -
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novaforjava
novaforjava is a general purpose, Celestial Mechanics, Astrometry lib
...The intended audience of libnova is java programmers, astronomers and anyone else interested in calculating positions of astronomical objects or celestial mechanics. It is a reimplementation of libnova with is the calculation engine used by the Nova project and most importantly, is free software. -
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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A Java toolkit for the creation of physics simulations and 3D visualizations. Developed as part of the Technology Enabled Active Learning (TEAL) initiative at MIT.
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openhealthpractice
A simulation environment for physiology models simulation
...This simulation environment is built using Spring Framework and Java technologies. For more information on how to deploy and use the tool, check the installation and user manuals. This tool was developed within the Synergy project. You can view our publication about the Simulation Environment here: http://www.translational-medicine.com/content/12/S2/S7 The rest of the publication outcomes of the project can be found here: http://www.translational-medicine.com/supplements/12/S2 -
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Athus
Manage, merge, filter and convert population genetics data
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... -
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Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
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DeCoAgent Library
Deliberative Coherence Driven Agent
This project is an extension to Jadex Framework and aims to develop an autonomous agent which is using adaptive decision making architecture based on Thagard’s deliberative coherence. -
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coalescent
Software tool for Research in Computational Population Genetics
Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT -
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FALCON - Text Search Java Project
JSON based text search Java Project
...- ----------------- The "Falcon Search" is a JAVA API and tool to search inside the documents. It was originally started to search the content in pdf files under the project "HAWK Search". Searching with this tool is query-based not word-based as in most of the document search tools OR document readers. It also takes care of jumbling of words within query and spelling mistakes. Commonly used techniques in this project are Natural Language Processing, Information Extraction and Question-Answering Architecture. ---------------------- - Latest Version - ---------------------- Details of latest version can be found on project website - http://geekdadaji.com --------------------------- - CONTACT DETAILS - --------------------------- CREATOR : SWAPNIL A JADHAV (saj1919) EMAIL ID : dadajibudhau@gmail.com WEBSITE : http://geekdadaji.com LICENSE : CC BY-NC 4.0 -
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Curvilinear and Rectilinear Motions
Simple physics simulation of Curvilinear and Rectilinear Motions
This project has the role of simulating simple Curvilinear and Rectilinear Motions with an easy to use user interface. This program can be used for educational purposes as well as for any other purpose anyone would like. The executable file is a .jar files which means that it can run in any operating system that supports java. Above you can see a screenshot of the program while it is operating. -
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TreeBASE is a database and web front end that stores phylogenetic trees and the data matrices used to generate them. The current iteration comprises a complete rewrite of the schema and web layer, and will include a web services layer.
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Java VCO Simulator
VCO Simulator written in Java.
This project is a demonstration of a Voltage Controlled Oscillator that is written in Java. -
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Factory Equipment Network Testing
Measurement science-based performance & conformance testing framework
...Connecting equipment to the factory network can make accurate production information immediately available, but widespread interconnection of equipment has been inhibited by the lack of common information models and methods to measure performance and conformance. This project will develop and deploy a measurement science-based performance and conformance testing framework to enable real-time factory floor monitoring and optimization of manufacturing applications. -
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famos
Framework for Agent-oriented MOdelling and Simulation
...Famos implements event-driven time advance and focusses on supporting an explicit model of space for the environment, including the movement of agents. Famos was developed in the context of a PhD project. Many aspects of its implementation are therefore still in the prototype stage. It does come with two example models (a re-implementation of Schelling's segregation model and of Epstein and Axtell's Sugarscape model). Famos -
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TriageTools
Tools for partitioning and prioritizing fastq data
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information. -
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (< Integer.MAX_VALUE vertices). ...