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Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...

... this code base with support from the US National Science Foundation ADBC TCN for New England Vascular Plants NSF #1208835 Precapture Application: http://doi.org/10.5281/zenodo.154176 Migrated to GitHub PreCaptureApp: https://github.com/MCZbase/PreCapture Desktop App https://github.com/MCZbase/DataShot_DesktopApp Web App components: https://github.com/MCZbase/datashot_ejb https://github.com/MCZbase/datashot_web https://github.com/MCZbase/datashot_ee

Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional...

3D viewer which arranges BLAST hits and other bioinformatics-related alignments in a rotating, cylindrical display. Feedback appreciated. NOTE: requires Java3d installation. Superceded by Cylindrical Alignment App

The goal of project is delivering useful and simple tools to creating charts. Functionality is provided by modules/plugins (OSGi technology). It allows you to create your plugins or customize Analysis application (by changing installed plugins in application). The Application, thanks to JAVA technology, is portable on the most operating system. In Files page you can find the application and also patches to its.

Put a Map in your App! MyMaps makes it easy for Java developers to add maps to Swing applications. With access to WMS, Shapefile, Tiger and other free formats, you can add maps while avoiding the restrictive Terms of Use of those online mapping sites.