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...It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
...AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010).
Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013).
codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE). For more details, follow the link: http://mbe.oxfordjournals.org/content/30/6/1270. codonPhyML is on the cover of MBE! Check this out...
LibreEngineering - suite of instrumentation, electrical, mechanical, process engineering calculation and design programs and other tools. Licensed under GPL3. Written in Python with Qt toolkit.
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A small, basic, yet powerful and competent primality tester.
IsItPrime is a powerful, cross-platform, multi-threaded standalone application capable of testing massive numbers in several ways through a highly interactive and easily-understood user interface.
As of version 2.0.0, IsItPrime and other NCPrime applications no longer require the Visual C++ 2010 Redistributable for Windows. All NCPrime applications released after 1 November 2012 use the Qt framework and thus require Qt libraries (included) for cross-platform compatibility.
IsItPrime is in active development.
Image analysis estimating cell density in arrayed microbial cultures
...Forms part of the Quantitative Fitness Analysis (QFA) workflow:
http://research.ncl.ac.uk/qfa/
Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package:
http://qfa.r-forge.r-project.org/
This is the version presented, used and demonstrated in the following manuscripts:
Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287
Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362
Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216
Banks et al. 2012 http://dx.doi.org/10.3791/4018
Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster:
https://github.com/CnrLwlss/Colonyzer
Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
tXtFL is a strategy-based football simulator. Teams can be created from real stats on the web, built through custom designed plays, and then used to coach games or predict scores. Note that as of 2010, all new development is taking place at http://textflex.com/txtfl.
Hier wird die Versionsverwaltung (SVN) für die LaTeX-Mitschrift der Vorlesung "Analysis für Informatiker und Statistiker" gehostet. Diese findet im WS 2009/2010 an der LMU München statt.
...Fast Principal Components Analysis method for finance problems with unequal time steps. In P. L'Ecuyer and A. B. Owen, editors, Monte Carlo and Quasi-Monte Carlo Methods 2008, Springer Verlag, 2010