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Trial Criteria Online Data Entry (trialCODE): a Java-based user interface that codifies eligibility requirements used to automate the screening of potential subjects to clinical trials. Used for caMATCH screening engine on BreastCancerTrials.org site.
Ex-Crawler is divided into 3 subprojects (Crawler Daemon, distributed gui Client, (web) search engine) which together provide a flexible and powerful search engine supporting distributed computing. More informations: http://ex-crawler.sourceforge.net
The Virtual Commons (http://commons.asu.edu) is an open software initiative devoted to computational experiments on collective action and resource governance and funded by Arizona State University's Center for Behavior, Institutions, and the Environment (http://cbie.asu.edu).
NOTE: we've moved our development to GitHub at https://github.com/virtualcommons - please look for the latest versions there.
Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes
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SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.
A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
...If you would like to take on the maintenance, please contact me at https://mastodon.social/deck/@mrtmd
Open Bioprocess Monitor aims to be open source remote monitoring system for bioreactors. System (written in php) can display all available data in a webbrowser. Currently system has been built as a proof of concept for educational purposes.
PORIS toolkit allows describing graph-based systems and their behavior in a snapshot. It provides a web
editor for a domain visual specific language (DSL) and transformation tools to generate software prototypes, system configurations, ...
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h2:www is an easily extendable online interface for bioinformatical command-line tools, providing convenient project-oriented working facilities for multiple users.
Science Laboratory Inventory and Order Management System
Science Laboratory Inventory and Orders Management System: suitable for school's science laboratories to manage stored items (chemical and equipment) and adds a way to order these items on-line for science lessons and practical experiments. It's PHP/MySQL web application which needs to be installed in one server and runs in any client's browser with no modification at all. It's a multi-user system with different privileges. Demo is available at: http://sciencelabinv.sourceforge.net/demo/
This LabView project includes a Web Service (WS) and website interface hosted by a LabView server. The WS and website allow clients to acquire measurements from instruments remotely in real time, using standard browsers (e.g. iPhone) without plugins.
The SPASE Data Model Explorer is a webbrowser application that enables interactive exploration of the SPASE data model. The data model is organized in a tree and dictionary entries rendered for viewing in the browser.
The SPASE Registry Explorer is a webbrowser application that enables interactive exploration of a SPASE compliant registry. The contents of a SPASE registry are organized in a tree and resource descriptions rendered for viewing in the browser.
NMRShiftDB is an open-source, open-access, open-submission, open-content web database for chemical structures and their nuclear magnetic resonance data.
Automata Based Programming Tool for implementing logic for J2SE, J2EE and Sybmian applications. Consists of Java FSM Framework and Eclipse Plugin parts. Plugin implements UML model editor, visual debugger, validator, compiler and interpreter for Eclipse
A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.
NG4J - 'Named Graphs API for Jena' is an extension to the Jena Semantic Web framework for parsing, manipulating and serializing sets of Named Graphs. For details about Named Graphs see http://www.w3.org/2004/03/trix/
Earnest is a A PHP-MYSQL AI EXPERT SYSTEM for creating powerful expert system easily. Its simple PHP API can also be called from JAVA, browsers or other software to perform GIS and other comparisons. Also has ability to create XML results.
CommonMap is an open source map project, forked from OpenStreetMap by a licence problem. CommonMap needs original softwares tuned for CommonMap. Most of software would be useful for any other open source map projects, too.
Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
OmicBrowse, developed with Flash and Java, is a highly evaluated genome browser integrating omics knowledge ranging from genomes to phenomes and is especially appropriate for positional-cloning purposes.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org
These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases.
See https://taverna.apache.org/download/ for the latest releases from Apache Taverna.