Search Results for "draft"

...With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting in near perfect pre-assembly reads. Contigs are generated using different assembly algorithms and then merged together to achieve longer continuity. Re-aligning all the reads back to the draft contigs and recalibrating each sequence base achieves a final consensus. Using finished clones for QC, the pipeline is able to obtain assemblies with clone coverage of 99.7% and consensus base quality of Q39. Developed at the Wellcome Trust Sanger Institute.

... (3) Department of Mathematics and Statistics, University of Melbourne, Victoria 3010, Australia. (4) School of Medicine, University of Melbourne, Victoria 3010, Australia Draft paper available at http://arxiv.org/abs/1503.01814

MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.

vcif is an open source software for validation of Crystallographic Information Files. It supports lexical, parser and dictionary validation (DDL 1 and 2 are fully supported, DDLm draft partially supported)

Free cross-platform viewer for seismic data in SEG-Y format (Revision 1 draft 6 and its modifications).