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tek generates a Makefile from a set of .tex files. It automatically converts images to the correct formats, pre-processes included files (for example, converts .gnuplot files into graphs), and handles latex options (such as bibtex).
Gentoo .ebuilds are available.
tek uses pconfigure to build
https://sourceforge.net/projects/pconfigure/
A group of useful tools for working with 802.15.4 networks. Currently includes a sniffer that interfaces with Wireshark in Windows/Linux (and maybe Mac OS X too), allowing you to do 802.15.4, ZigBee, and 6LoWPAN Sniffing.
MOVED TO GITHUB: https://github.com/noporpoise/seq-align
An implementation of the Smith-Waterman local sequence alignment algorithm.
See our sister project global alignment using Needleman-Wunsch:
http://sourceforge.net/projects/needlemanwunsch/
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** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **
niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
Java Decision Diagrams (BDD) libraries: JDD and JBDD
This project has been moved to bitbucket.org:
- https://bitbucket.org/vahidi/jbdd/wiki/Home
- https://bitbucket.org/vahidi/jdd/wiki/Home
It includes two libraries for working with decision diagrams:
- JBDD: a Java interface to two popular BDD libraries, CUDD and BuDDy
- JDD: a native Java library supporting BDD, Z-BDD
This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.
This project aims to be a easy-to-use toolkit of algorithms and utilities for semantic data mining. So far all algorithms are implemented as web services and we provide widgets for their use in the Orange4WS data mining platform.
An open-source collection of materials for lectures, tutorials, labs, and software for a variety of primarily Computer Science courses. The materials include various course notes, presentation slides, source code samples, etc.
Localization system for ZigBee networks. Based on the analysis of RSSI, estimates the positions of the mobile nodes. Firmware in C for the ZigBee modules. Java service produces results in a accessible webservlet, the user can manage the WSN network.
The goal of the See&Touch project is to design/implement a special mouse for disabled people, which allows a person to fully control a computer by using just vision and one single body movement. This project develops hardware, firmware and software.
XDAQ is a software platform designed specifically for the development of distributed data acquisition systems. The development is carried out at CERN, the European Organization for Nuclear Research. Please visit http://xdaq.web.cern.ch
A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
ECL is a system-level specification language for HW/SW designs and is based on Esterel and C.
The ECL compiler parses ECL, writes Esterel and C, and uses the Esterel compiler to produce an implementation.
Originally developed at Cadence Berkeley Labs.
Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
Open source, cross platform drivers and function library for the NovInt Falcon Haptic Controller. These drivers are not produced by Novint Technologies, Inc. and do not come with any warranty as to their correctness or usage.
PocketDepth helps determine binding grooves for protein molecules. Applicable in Bioinformatics and Drug discovery.
Literature - http://www.ncbi.nlm.nih.gov/pubmed/17949996
Author's thesis - http://openwetware.org/wiki/Kalidas_Y