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simple event-based plugin interface to open up hardwired software
...It is based on successful Interactive Compilation Interface (ICI) which was added to mainline GCC >= 4.5. It supports C,C++,Fortran and Java. OpenME requires just one include file "openme.h" and 2 functions to register events or to have a call-back.
The usage of this interface is briefly described in an open access publication available at http://arxiv.org/abs/1308.2410
The goal of the Fortran-to-Java project is to provide JavaApplication Programming Interfaces (APIs) to numerical libraries originally written in Fortran (particularly BLAS and LAPACK). The result of this work, JLAPACK, is distributed here.
Constructing level-1-networks consistent with a set of quartets
This project is an implementation of an algorithm by J. Keijsper and R. Pendavingh. The goal of the algorithm is to construct a phylogenetic level-1-network that is consistent with a given set of quartets.
The Robot Application Programming Interface Delegate (RAPID) is a software reference implementation for remote operations. It promotes interoperability between robot software modules. RAPID includes a standard “API” and data distribution middleware.
Software for the autonomous robot GATTACA (alias CrossTiger).
C-Code for low level control on Atmega328p.
JAVA-Code for remote control panels and online/offline data visualization.
Technical analysis library with indicators like ADX, MACD, RSI, Stochastic, TRIX... includes also candlestick pattern recognition. Useful for trading application developpers using either Excel, .NET, Mono, Java, Perl or C/C++.
BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.
Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.
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A group of useful tools for working with 802.15.4 networks. Currently includes a sniffer that interfaces with Wireshark in Windows/Linux (and maybe Mac OS X too), allowing you to do 802.15.4, ZigBee, and 6LoWPAN Sniffing.
The goal of the See&Touch project is to design/implement a special mouse for disabled people, which allows a person to fully control a computer by using just vision and one single body movement. This project develops hardware, firmware and software.
Software application, firmware and U.I. for 4-motors 3-axis milling machine, open hardware, software and mechanics. See also project in details for schematics and images on http://www.contesti.eu/opensource/xyz-dc-motor-controller
EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
Code for the SALAMANDER environmental sensor project. SALAMANDERs are wireless motes (Crossbow TelosB with MSP430 processor) with a string of sensors attached. Mote code is in nesC. DataGetter java code enables mobile phones to collect sensor data.
OpenDMTP is a protocol/framework that allows communications with small devices (mobile phones, PDA's, and other high-latency/low-bandwidth devices), especially geared towards the transmission of GPS, temperature, and other remote monitoring information.
A graphical MatLab framework for estimating the parameters of, modeling and simulating static and dynamic linear and polynomial systems in the errors-in-variables context with the intent of comparing various estimation strategies.
This desktop application provides graphical control of K8055, a USB Experiment Interface Board by Velleman (http://www.velleman.eu/). It will be mostly platform-independend at a later time. The current (beta) version is for windows 2000/XP/Vista/7 on 32Bit. It is incompatible with all other Operating Systems and with 64Bit architecture.
I stopped developing this application. Feel free to reuse the code or contact me on Questions.
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
The Rossum Project is an attempt to collect and distribute robotics software. We are seeking help with our first project, a mobile-robot simulator featuring a 2-D virtual world, and new work including artificial intelligence and robot-control logic.
The CodeTime platform covers every aspect of parallel software from authoring, through distribution, to run-time. Its goals are: high programmer productivity; write once, run high performance anywhere; and wide acceptance.
TimeSleuth discovers temporal decision rules. It also judges the (a)causality of the rules. TimeSleuth can discover rules that involve time: {if (rainy_yesterday = true) then rainy_today = true}, or {if (rainy_tomorrow = true) then rainy_today = true}.
The goal of zAutomation project is to design/implement hardware, firmware and software for remote control and monitoring of physical objects, by using the ZigBee technology and internet. The field of application is robotics and domotics.