Software to calculate profiles around TSS and TTS of yeast mRNAs
...The profile is obtained by calculating the genome-wide Pearson correlation coefficient (R) between the genomic variable values and the TSS (or TTS) counts at incremental shifting of transcribed strand. The data of TSS and TTS counts used to compute the profiles were taken from the work of Pelechano et al. (1). The input file must be a BedGraph formatted file based on yeast genome sequence release R64. The output file is a text tab-delimited table reporting R values for the various shifts of variable coordinates with respect to TSS or TTS. R related to each strand is also reported to verify that a similar profile is obtained in the two direction of transcription.
1) V. ...
Drilling Calculator, Calculate all your drilling numerical with least effort and most accuracy! (for student purpose only, not professional usage). Application developed on C#. (c) 2011, Chiradeep Gupta; University of Petroleum and Energy Studies.
This program is able to detect circles in images. Therefor it uses the hough algorithm CvHoughCircles from the OpenCV library. You can define all parameters e.g. min-/max radius, min distance between circles, all kinds of thresholds, filters and so on.