Search Results for "genetic algorithm php"

Geophysical Library is a C++-library to handle geophysical data. At the moment the focus is on magnetotelluric and seismic data. It also includes a genetic algorithm for data inversion, signal processing and statistics routines.

...By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). See Appendix in Makukov & shCherbak (2017) for the description of the algorithm. The code requires Qt 5.

This software searches the potential energy surface of small to medium size atomic systems for global minima using quantum ab initio techniques. It performs bond rotations and molecule translations and rotations on a Linux cluster with MPI.

...The model used in the application is based on two significant papers: 1.1997 Pablo Umana, James E.Bailey A Mathematical Model of N-linked Glycoform Biosynthesis. 2.2005 Frederick J.Krambeck, Michael J.Betenbaugh A Mathematical Model of N-linked Glycosylation. The application allow to simulate the network in dynamic form with various ODE solvers(Euler, Runge-Kutta etc). Genetic Algorithm is used to adjust the kinetic parameters of Michaelis-Menten equations in glycosylation reaction network. A dynamic plot is supplied to show the value of mole amout and mole fraction of various glycoform. Thanks to Alexey Balakin and Alessandro Presta. Alexey Balakin supply mathgl(https://sourceforge.net/projects/mathgl) that make the implementation of dynamic plot in this application easily. ...

EurekaOptima is a framework for optimization containing the implementation of several algorithms like Genetic Algorithm (GA), Clonal Selection Algorithm (CLONALG), Grammatical Evolution (GE), Differential Evolution (DE), and Evolution Strategy (ES).

ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds.

...FamSeq accommodates de novo mutations and can perform variant calling at chromosome X. To accommodate variations in data complexity, FamSeq consists of three distinct implementations of the Mendelian genetic model: the Bayesian network algorithm, Elston-Stewart algorithm and Markov chain Monte Carlo algorithm. To make the software efficient and applicable to large families, we parallelized the Bayesian network algorithm that copes with pedigrees with inbreeding loops without losing calculation precision on an NVIDIA® graphics processing unit.

libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported.

...In addition, it can show the CMD of a large number of existing open clusters, based on scientific survey data, and overlay isochrones (the curve in a CMD from stars born at the same time) to determine the age, distance and interstellar reddening of the cluster. Determining these parameters can be done automatically with a global search algorithm (more specifically a genetic algorithm). This program requires the installation of the libfgen package, also available on SourceForge.

BIL++ is a set of standalone C++ packages for data processing in Bioinformatics (Graph mining, Bayesian networks, Genetic algorithm, Discretization, Gene expression data analysis, Hypothesis testing).

Evolutionary Structural Optimization Package (ESOP) consists of software for viewing, analyzing, and optimizing structures containing beam, truss, and membrane plate elements utilizing OpenGL and the Genetic Algorithm (GA). Created for use in M.S. theses

GA++ is a Genetic Algorithm library written in C++,

spGAL is a C++ Genetic Algorithm (GA) library. This is a portable scalable, and easy to use library written with ANSI C++.

This C++/STL library provides you with the basic genetic algorithms needed for engineering design, such as simple GA and variable population.

It moves by itself inside networks like virus infection & plagues, it is being written to solve computer virus problem drastically and responsibly. It is legal, free and open for public domain to improve W3 ICT Security.

C++ genetic algorithms library (solving of the NP opnimisation problems). More GA strategies, more useability, more algorithm speed.

The Genetic Architecture Framework is intended to explore and experiment with artificial life techniques using a genetic base for the physical and neural networks for the brain, in a game based simulated world.

Java port and extension of MLC++ 2.0 by Kohavi et al. Currently contains ID3, C4.5, Naive (aka Simple) Bayes, and FSS and CHC (genetic algorithm) wrappers for feature selection. WEKA 3 interfaces are in development.

A program that will grow realistic trees using the genetic algorithm.

This project aims at using the Artificial Intelligence (AI) algorithm called the Genetic algorithm to solve the problem of placement in the FPGA circuits.

Integer Singular Value Decomposition Genetic Algorithm Function Fitter. This is an optimization algorithm that performs a similar role to a neural network.

The SBMLevolver is an evolutionary algorithm package that creates SBML models with user-specified properties and behaviour from a given set of building blocks. Applications lie in network reconstruction and synthetic biology.