Search Results for "gas gnu assembler"
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Showing 27 open source projects for "gas gnu assembler"
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MESMER is designed to analyze and simulate reactions in the gas phase that take place on a potential energy surface that is characterized by having one or more potential wells, and which are typically described by rate coefficients that depend on pressure (or concentration) as well as temperature. MESMER allows you to simulate systems over a wide range of pressures and temperatures, extract rate coefficients, analyze experimental data, fit model parameters and represent rate coefficients in...
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ED Software project contains several programs used (mostly) for processing gas-phase electron diffraction (GED) experimental data.
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Integrated Development Environment for some microcontrollers based on 8051(e.g. AT89S8253). Supported languages are Assembly and C. It has its own simulator, assembler, editor and many other tools. See the project web site for more details and the newest updates.
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MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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Meraculous-2D
Eukaryotic Genome Assembler
---------------------------------------- IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https://sourceforge.net/projects/hipmer/ ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid... -
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bnf2xml
simple BNF parser makes xml markup of matches
bnf2xml a simple BNF parser that takes text as input, searches according to a BNF query file, and outputs text marked up by the xml labels that show context. bnf2xml is as simple to use as any text binary ie, awk(1) grep(1). bnf2xml does not require C API because it outputs simple xml labeling. README is visible on file dl page. EXAMPLE: $ echo "hi" | bnf2xml patternfile <word><alph>h</alph><alph>i</alph></word> or <gas>hydrogen iodide</gas> patternfile says how to find... -
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Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.
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SPA
SPA: a short peptide assembler for metagenomic data
The metagenomic paradigm offers the opportunity to study protein families, and therefore the metabolic and functional potential, of the constituent microbes in a community. A nucleotide assembly-based strategy does not fare much better since metagenomic assemblies are typically very fragmented and also leave a large fraction of reads unassembled. We present a method for reconstructing complete protein sequences directly from NGS metagenomic data. Our framework is based on a novel Short... -
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SOAPdenovo-Trans
A de novo transcriptome assembler.
Latest Codes on GitHub: https://github.com/aquaskyline/SOAPdenovo-Trans SOAPdenovo-Trans is a de novo transcriptome assembler inherited from the SOAPdenovo2 framework, designed for assembling transcriptome with alternative splicing and different expression level. The assembler provides a more comprehensive way to construct the full-length transcript sets compare to SOAPdenovo2. -
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The 1-dimensional gas-dynamics code. More information in http://www.openwam.com Modeling is an important technique for the optimization of internal combustion engines (ICE). The use of calculation models together with experimental tests is producing unquestionable successes due to the fact that both techniques complement each other. 1D wave action models simplify the engine by means of ducts, where only one dimension is considered, and volumes where mass accumulation is considered and...
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GC-EAD is software for acquiring and evaluating gas chromatograph (GC) electro-antennographic detection (EAD) data for use in insect research.
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates... -
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lilpM32 is a MIPS-like processor designed in Logisim, assembler program and documentation for them. Complete assembler and fully functional instruction set with I/O and subroutines features allow to write full-blown complicated programs.
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FPGAsm
Create fast bare-metal FPGA designs without Verilog or VHDL
FPGAsm is a low-level alternative to verilog and VHDL. A near-instant 'assembler for FPGAs', this simple yet powerful language facilitates bottom-up design, layout and wiring of modules, and generation of .xdl output. With about 10 keywords to learn, you can start making circuits in minutes. Now you can focus on learning the ins and outs of the FPGA instead of complex tools and languages. Fast turnaround time and bottom-up approach invite exploration, experimentation, live circuit... -
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Penacho
Smokestack pollutant dispersion simulator
Penacho calculates and draws the gas dispersion of a smokestack in the atmosphere. The plume evolution and the pollutant concentration distribution over the surrounding area can be seen in an interactive 3D graph. -
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LabMonkey Embedded Automation Platform
Create networks of embedded devices for data logging/automation tasks.
LabMonkey is a collection of designs for embedded devices which can be networked together to provide a range of automation, data logging and signal processing functions. A key design objective is to use as little dedicated hardware as possible for communication between nodes in the network, and to be able to adapt the network topology in real-time so as to minimize the occurrence of collisions between packets. To achieve this, a protocol has been designed specifically for the task, and... -
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This is an attempt to write a CPU emulator in Trolltech QT 4.4. Basic Functionality: - 8 bit registers - Self-composed instructoin set (in progress) - Data and Assembler Editor / parser (not started) - Text and graphical input / output (not started
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Iterate function viewer for Windows and Linux. It has built in 14 different iterate {Mandelbrot) functions. Many possibilities for changing parameters, saving as bitmap or small file. windows-32. Linux 32 - 64bit. Low level written in assembler.
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Simonion does not exist anymore; the package name is changed into Simbuca and is updated on the Simbuca webpage: https://sourceforge.net/projects/simbuca/
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OCR c++ library of computer optical recognition methods. In library: contour recognition; contour vectorisation; matrix letters feature recognition; web based GUI; assembler core on SS3 instruction; xml support; detect page rotation and segmentation;
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GTSP is a Gas Turbine Simulation Program. The user can model a gas turbine and run steady state and transient simulations.
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MEDDAC is the seeding point for designing a new approach to Operating System design itself. It is an Open Source project with roots in mainframe design and development the author began in 1979. Monitor Editor Disassembler Decompiler Assembler Compiler
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BorgASM will be a fully integrated environment for simulated cybernetic and robotic experimentation. A general purpose real-time AI/physics/animation engine core will facilitate virtual exploration of the unification of man and machine.
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An open source set of embedded software libraries in C, C++ and Assembler for robotics programming, targeting controllers using Motorola's 16 bit controllers, concentrating on the 6811 and 6812. Development of a common development toolset.
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kasm is an assembler for the Saturn microprocessor, used in the HP48/HP49 calculators. It uses MASD syntax, which has only very small incompatibilities with the traditional syntax, supports a few constructs that make the assembly language be closer to a
