Search Results for "detect"
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Showing 17 open source projects for "detect"
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janda
structural variant detector
Janda is a tool to detect structural variants in whole-genome DNA sequence data. It identifies structural variants (deletions, duplications, translocations, and inversions) using anomalously mapped pair reads and realigning potential junction reads. -
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XBNF Neurotranslator compiler
(X)BNF simple and clever translation grammar compiler
XBNF Neurotranslator is a powerfull extended BNF grammar language to handle translations easily and many features to handle different kind of situations. This project is for common arch binaries, C++ sources, tests & support tickets. No installation, juste get binary for your architecture : > See [Files] > binary.{version} Library of smart samples of grammars> https://sourceforge.net/projects/xbnf/ Docker image which embeds the Linux/64bits binary and the... -
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ntx
Neutrality tests using the SNP site frequency spectrum
Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations. -
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scalpel
Genetic variants discovery tool
Bioinformatics pipeline for discovery of genetic variants from NGS reads. -
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Saguaro Genome-Wide is a program to detect signatures of selection within populations, strains, or species. It takes SNPs or nucleotides as input, and creates statistical local phylogenies for each region in the genome.
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MULTOVL
Multiple overlaps of genomic regions
The MULTOVL suite of programs finds multiple overlaps among genomic regions. The MULTOVL algorithm can detect several kinds of region overlaps. In addition to the N-fold overlaps you can detect solitary regions which are the input regions that do not overlap with any other region in the input data set, and union overlaps that is the union of the input regions that overlap at least once somewhere. IMPORTANT NOTICE: MULTOVL has been migrated to BitBucket. -
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SAMSVM
A tool for misalignment filtration on SAM-format sequences with SVM
Applying the LIBSVM, a package of support vector machine, SAMSVM was developed to correctly detect and filter the misaligned reads of SAM format. Such filtration can reduce false positives in alignment and the following variant analysis. -
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...MGEScan-LTR is a software that can identify new LTR retrotransposons without relying on a library of known elements. It uses approximate string matching technique and protein domain analysis to detect intact LTR retrotransposons. In addition, it identifies partially deleted or solo LTRs using profile Hidden Markov Models (pHMMs). MGEScan-non-LTR is a software for the identification of non-LTR retrotransposons in genomic sequences, following a computational approach inspired by a generalized hidden Markov model (GHMM). References: 1. ...
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GraFIX is a software and a method to detect fixations in low and high quality data, consisting of a two-step process in which eye-tracking data is initially parsed by using adaptive velocity-based algorithms, before it is hand-coded using the graphical interface, allowing accurate and rapid adjustments of the algorithms' outcome. GraFIX is released under the GPLv3 public license (http://www.gnu.org/licenses/).
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This program is able to detect circles in images. Therefor it uses the hough algorithm CvHoughCircles from the OpenCV library. You can define all parameters e.g. min-/max radius, min distance between circles, all kinds of thresholds, filters and so on.
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NovelSeq
Novel sequence insertion detection
The NovelSeq pipeline is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. -
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GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages.
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The count of vehicles is a key task in traffic gauging, as it provides information for designing new roads. This software presents an algorithm to detect and track vehicles in real time or from a video file.
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Building code for small model Unmanned Ground Vehicle. This only use a single webcam (monocular) as its sensory purpose. We would be using VC++ and OpenCV library.
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OCR c++ library of computer optical recognition methods. In library: contour recognition; contour vectorisation; matrix letters feature recognition; web based GUI; assembler core on SS3 instruction; xml support; detect page rotation and segmentation;
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OCR c++ library. Include: contour recognition; vectorisation; matrix letter feature recognition; auto page segmentation and detect rotation; SS3 ASM core; XML base; web-based GUI; 99,6% printed Unicode text recognition; letter base up to 1200 letters.
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The Human Body Project allows computers to better understand and interact with people. Using a webcam the system can detect and recognise individuals (face recognition), identify their gaze direction, facial expressions and upper body postures.
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