Search Results for "annotation"

This is a Windows-based wireframe viewer currently designed for CDR & 2D R12 DXF files. The DXF renderer supports arcs, circles, lines and polylines. Support for SVG files is coming shortly. Go here to check for updates: https://www.vvwr.net

A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data

A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are...

...Efficient memory management of the program and the elimination of preliminary parsing step enable to carry out the analysis at ordinary computers. VCF-Explorer presents an easy to use environment where various types of queries for the annotation and the samples can be defined. VCF-Explorer can be run at different environments and computational platforms ranging from a standard laptop to an advanced server.

STEAM-Sim establishes a hardware/software/network co-simulation of wireless sensor networks. Original C code is used in simulation. The code is natively executed by the cpu where the simulation is run. The time annotation engine annotates the C source code used for simulation with the timing information as if the code is run on a microcontroller. The annotation process is fully automated. Hardware models are developed using the PAWiS framework and reflect the timing, functionality, and energy-consumption of real-world hardware such as a CC2420 radio transceiver. ...

...It is developed and maintained by George Christodoulides (Centre Valibel, IL&C, University of Louvain, Louvain-la-Neuve, Belgium). Visit www.corpusannotation.org to find out more about DisMo and other annotation tools for language corpora. If you are using DisMo to annotate your corpus, please cite the following paper: Christodoulides, George; Avanzi, Mathieu; Goldman, Jean-Philippe. DisMo: A Morphosyntactic, Disfluency and Multi-Word Unit Annotator. An Evaluation on a Corpus of French Spontaneous and Read Speech. Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC) 2014, Reykjavik, Iceland, 26-31 May 2014, pp. 3902-3907.

Predict if storage utilised will reach capacity within defined period (maximum 5 years), using recent historical data contained within RRD files (maximum -1 year). Produces HTML (or partial HTML) and, more importanly, a PNG RRD Graph showing the prediction and, should the capacity be reached, an annotation indicating when. Optionally email out exception notices.

This project is the implementation of The Virtual Collaborative Environment (VCE) which supports clinical applications of 3D modeling in medicine. The system is based on three layer client-server architecture.

ARTADE (ARabidopsis Tiling-Array-based Detection of Exons) is a standard tool for the automatic annotation of genome-wide tiling-array data in Arabidopsis. ARTADE is a program originally written by Dr. Tetsuro Toyoda, RIKEN, Japan.

DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV

The ShapeAnnotator is an interactive GUI for the inspection, segmentation and semantic annotation of 3D surface meshes.

AGTK is a suite of software components for building tools for annotating linguistic signals, time-series data which documents any kind of linguistic behavior (e.g. audio, video). The internal data structures are based on annotation graphs.

A tool for analyzing video data of human user studies. Allows playback of multiple video streams simultaneously, along with annotation capabilites and visualization of aggregated annotation categories. Written in C#, with c++ directX for video playback.

GENtle is a free multipurpose tool for genetics and biochemistry. It manages DNA and amino acid sequences, does PCR, restriction, ligation, sequence annotation etc.

Cis-Regulatory analysis modules. Includes frequenc/weight matrices scanning at genome level, annotation by using DB access to ensembl, genekeydb, etc. and visualization (through Bioperl or as custom UCSC tracks). May include gene set analysis in future.

DNA, Amino Acid And RNA Tests: free software for probabilistic measurement and annotation of biological sequences, using phylogenetic Markov chains and stochastic grammars.

A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats.