23 projects for "tab" with 2 filters applied:

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    Build Agents and Models on One Platform

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  • 1
    BioXTAS RAW

    BioXTAS RAW

    Processing and analysis of Small Angle X-ray Scattering (SAXS) data.

    ...Active source code is now maintained on github: https://github.com/jbhopkins/bioxtasraw To install: Check the instructions available at: http://bioxtas-raw.readthedocs.io/en/latest/install.html and in the Files tab. User guides: RAW guides are available at: http://bioxtas-raw.readthedocs.io/ and in the Files tab. To contact us, see: https://bioxtas-raw.readthedocs.io/en/latest/help.html
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    Downloads: 73 This Week
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  • 2

    MView

    Extract and reformat a sequence database search or multiple alignment

    ...Inputs: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. Outputs: - HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated). Found a bug? Please open an issue on the MView issue tracker at https://github.com/desmid/mview/issues or send an email to biomview@gmail.com.
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    Downloads: 12 This Week
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  • 3
    ...Has graphs, statistics, printing, diabetes devices support (meter, pump, CGMS). It works on any platform supporting at least Java 5 (1.5). Our repo moved to GIT (click on tab Git Code), Lowest supported Java now is 1.8 and project code base is in process of redesign (updating libraries and ways how application is built and run). IMPORTANT: Project was moved to GitHub: https://github.com/andyrozman/ggc on 4th April 2024
    Downloads: 0 This Week
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  • 4
    Comet MS/MS search engine

    Comet MS/MS search engine

    Comet open source tandem mass spectrometry (MS/MS) search engine.

    ...Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS database search. Supported input formats are mzXML, mzML, ms2, and Thermo RAW files. Supported output formats are tab-delimited text, Percolator pin, SQT, and pepXML Documentation and project website: http://comet-ms.sourceforge.net
    Downloads: 4 This Week
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  • 5
    javahexeditor Java Hex Editor

    javahexeditor Java Hex Editor

    A hex editor Eclipse plugin and multi-platform desktop application

    ...Older versions of the Eclipse plugin are available via the update site for the version, e.g. https://javahexeditor.sourceforge.io/update/0.5.1 You can download the latest stand-alone version and older versions on the "Files" tab.
    Downloads: 1 This Week
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  • 6

    bspipe

    An End-to-End Analysis Pipeline for BS-seq

    BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files for visualization, and (9) support for advanced sequencing technologies such as TAB-seq, OxBS-seq, MAP-it, and NOMe-seq.
    Downloads: 0 This Week
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  • 7
    JBioFramework

    JBioFramework

    Growing suite of proteomics simulations for educational purposes

    ...Please don't hesitate to review the software below or email Paul Craig [pac8612@rit.edu] with larger descriptions/bugs/feature ideas. Our next scheduled release will contain (in addition to 2DE and MassSpec) a 1D Electrophoresis simulation as well as a tab containing ChemAxon's MarvinSketch [http://www.chemaxon.com/products/marvin/] along with some improved functionality. It should be out shortly as we complete the creation and modification of a permanent domain for the project.
    Downloads: 0 This Week
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  • 8

    denovo_hit

    Outputs potential denovo variants from VCF given pedigree information.

    .../denovo_hit <VCF file> <PED file> Output: ./potential_denovo.txt To compile: g++ -std=c++11 denovo_hit.cpp -o denovo_hit Please see files for example VCF file, and pedigree file. Format VCF file (tab delimited): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT, SAMPLE_ID, ... Format pedigree file (tab delimited): SAMPLE_ID_CHILD, SAMPLE_ID_PARENT1, SAMPLE_ID_PARENT2 Output file format (tab delimited): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, PEDIGREE, CALL_STATS, COUNTS ...
    Downloads: 0 This Week
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  • 9
    PANorama2.0

    PANorama2.0

    PANorama: Panicle phenotyping for Oryza sativa

    PANorama is a Linux-compatible, open-source software package for panicle image acquisition, processing, and phenotyping. PANorama 2.0 contains new phenotype measurements and is available for download within the "Files" tab listed above. Installation and user instructions are located within the "Wiki" tab. How to videos are available for streaming at the link below, or for download in the "Files" tab above. Information regarding the project and funding can be found at http://ricediversity.org, and within the corresponding publications and how-to videos: How to videos: http://vimeo.com/cornellricelab PANorama1.0 (Crowell et al. 2014): http://www.plantphysiol.org/content/165/2/479.short PANorama2.0 (Crowell et al. 2016): (http://goo.gl/vQux5Z)
    Downloads: 0 This Week
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  • 10
    The Moving Finite Elements project hosts a collection of simulation codes for time-dependent PDE systems that implement various forms of Keith Miller's gradient-weighted moving finite element (GWMFE) method. The Calliope sub-project aims to provide new reference implementations in modern object-oriented Fortran. Click on the Calliope tab on the main project menu bar.
    Downloads: 0 This Week
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  • 11
    The MAGE-TAB Utilities project provides a simple Perl SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. All file releases are now being made via CPAN.
    Downloads: 0 This Week
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  • 12

    c4nhanes

    command line tools for processing tab delimitted statistics

    The national health and nutrition examination survey (NHANES) is done by the center for national health statistics. Data is made available for public use by this group for research; however, it is in a format that is not universible accessible. This provides the data in a simple format as well as a set of tools to manipulate the data. It can interface with open office and libreoffice using their csv filter.
    Downloads: 0 This Week
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  • 13
    pyisocalc

    pyisocalc

    Isotopic pattern calculator in python 2.x

    This is an isotopic pattern calculator written in python. It depends on re, sys, numpy, operator, itertools, and matplotlib.
    Downloads: 0 This Week
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  • 14
    Audivolv

    Audivolv

    Artificial intelligence evolves musical instruments played with mouse

    Artificial Intelligence (AI) evolves musical instruments you play with the mouse from small blocks of Java code that operate on numbers, each block designed to keep all numbers in range -1 to 1 if they started in that range, and combinations of these evolved codes running 44100 times per second for high quality 44.1 khz audio. You can also write the Java code into its window. Uses Javassist internal compiler on the new Java code assembled by renaming variables to overlap eachother and...
    Downloads: 0 This Week
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  • 15
    jCircuits

    jCircuits

    An easy-to-use Simulation of Hardware-Gates

    ...There are also 2 Applet-Versions - the full Version and a only-Display-Version ---------- USEFUL TIPS: ---------- Always enter the Edit-Mode (swiss knife) bevor editing something ;) [!! IMPORTANT !!] Try out the examples ("Components"-Tab -> Choose a Circuit -> Add Button) Leave the Edit-Mode to control interactive elements Press >>Alt<< to draw a Selection-Box Press >>Shift<< to complement your Selection
    Downloads: 1 This Week
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  • 16
    A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns
    Downloads: 0 This Week
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  • 17
    IncrediBots
    ...Design your robot by drawing shapes, joints, motors, and more! Then, pilot your machine using your own custom key bindings. NOTE: OPEN SOURCE VERSION CAN BE DOWNLOADED FROM "FILES" TAB!
    Downloads: 17 This Week
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  • 18
    Python program for fitting rate constants to primarily kinetic data as 1st or 2nd order kinetics or autocatalysis. It also allows specific noise cancelling, data smoothing by fourrier transform, box averaging and flowing mean. For Python 2.6 or earlier.
    Downloads: 0 This Week
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  • 19
    These simple programs are for doing data reduction and then display of columns of tab delimited data. They are designed to be piped together so you can do multiple things at once. This means they typically read from stdin and output to stdout.
    Downloads: 0 This Week
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  • 20
    C++ Widget Library for CGI/FastCGI applications based on Ajax. Test cases for Tomcat Server and XDAQ framework are available. Widgets included: Tab,Form,Button,Tree,LayoutContainer,Frame,Table,Dialog,FishEyeMenu,EventHandler, etc.
    Downloads: 0 This Week
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  • 21
    FreeNorm is a cross-tabulation web application adapted from SurveyComplete's real-time reporting system. Currently it can run tabs on extremely large datasets, export to Excel, read ASCII data, and understand table definitions in the UNCLE tab language.
    Downloads: 0 This Week
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  • 22
    Server/Client System for managing a Scientific Journal. Cross platform wxWidgets based.
    Downloads: 0 This Week
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  • 23

    geoscipy

    Python-accessible toolkit for Geoscience & Remote Sensing Applications

    ...While there are other open-source GIS, and image-processing packages available, this one is designed to be comprehensive, work on 3 major platforms, user-extensible, fast, and able to handle huge datasets. Click the Blog tab for more info.
    Downloads: 0 This Week
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