3 programs for "seeds" with 2 filters applied:

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  • 1
    olego

    olego

    OLego – short or long RNA-seq read mapping to discover exon junction

    OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast...
    Downloads: 0 This Week
    Last Update:
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  • 2
    Murasaki
    Whole-genome scale multiple genome local alignment search program. Supports unlimited length gapped-seed patterns, parallelization through distributed hashing, and unique a TF-IDF based repeat filtering method.
    Downloads: 0 This Week
    Last Update:
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  • 3
    BigAl

    BigAl

    a free cross platform calculator for calculating BIG numbers

    BigAl is a free open source and platform independent software for calculating really BIG numbers. It supports not only standard arithmetic, but also exact period determination, predefined factorials, fibonacci with seeds, factorization, nth root, etc
    Downloads: 9 This Week
    Last Update:
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