Search Results for "s-tools"
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699 projects for "s-tools" with 2 filters applied:
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Stop vibe-debugging.AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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LabClaw
Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists)
LabClaw is an open-source AI experimentation and agent orchestration platform designed to help developers build, test, and iterate on complex autonomous workflows in a controlled and modular environment. It provides a framework for composing multiple tools, prompts, and execution steps into structured pipelines that can be reused and evaluated across different scenarios. The system emphasizes experimentation, allowing users to run multiple variations of agent workflows, compare outputs, and refine performance over time. LabClaw is designed to integrate with various large language models and external tools, enabling flexible configurations that adapt to different use cases such as automation, research, and product prototyping. ... -
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CBIG
Computational Brain Imaging Group tools
...Brain parcellation tools (e.g., Yeo networks, Schaefer parcellations) for cortical mapping. -
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ControlSystems.jl
A Control Systems Toolbox for Julia
ControlSystems.jl is a Julia toolbox for control systems design and analysis, offering models in transfer-function and state-space representations, enabling construction of complex systems, simulation in time and frequency domains, and performance/stability evaluation. This toolbox works similar to that of other major computer-aided control systems design (CACSD) toolboxes. Systems can be created in either a transfer function or a state space representation. These systems can then be... -
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Tile38
Ultra Fast Geospatial Database & Geofencing Server
...It supports a variety of object types including lat/lon, Geohash, bbox, GeoJSON, QuadKey, and XYZ tile; and is capable of operations like Nearby, Within, and Intersects. There’s also built-in support for many popular tools. Tile38 is made up of 3 main components: the server, command line interface tool and server benchmark tool. It is completely free and open source and is available for OSX, Linux, FreeBSD, and Windows. -
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Grafana
Leading open-source visualization and observability platform
...Grafana includes capabilities such as ad hoc data exploration, alerting, annotations, and flexible query support. Its extensible plugin ecosystem integrates with cloud platforms, databases, and developer tools—allowing teams to build observability workflows without vendor lock-in. The easiest way to get started with Grafana is with Grafana Cloud, our fully managed, full-stack observability platform. -
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Open Source Text to CAD Harness
An open source harness for generating CAD models
Open Source Text to CAD Harness is an open-source framework that enables the generation of parametric 3D CAD models using natural language prompts interpreted by AI coding agents. It acts as a harness that converts text descriptions into source-controlled CAD scripts, which are then compiled into geometric models using tools like OpenCascade and build123d. The system emphasizes reproducibility by storing CAD logic as editable code rather than opaque binary files, allowing iterative refinement through agent-driven workflows. It includes a local visualization interface called CAD Explorer for inspecting generated geometry and supports multiple export formats for engineering and manufacturing use. ... -
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Community Z Tools
Tool support for the Z formal notation
Community Z Tools Project (CZT): Tools for editing, typechecking and animating Z specifications and related notations. Includes a Java framework for building formal methods tools. NOTE: development of CZT has now moved to GitHub: https://github.com/community-z-users/czt -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Java Modelling Tools is a suite of scientific tools for performance analysis and modelling using queueing theory and colored stochastic Petri nets. Models are solved either with analytical, asymptotic or simulation methods; workload characterization tools are also included in the suite. See the project website for more details: http://jmt.sf.net
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LAnd Survey Tools "LAST" was created to preserve and expand on the work invested in an old, privately used, DOS based land survey construction and data collection application by porting much of the C++ coded logic and design concept over to Python.
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Mobile Open-Source Software and Tools
Android, UIQ 3.0, Series 60 Edition 5 open-source software
Android, Symbian UIQ 3.0 and Symbian Series 60 Edition 5 open-source software, tools, libraries and themes. Most notable the FX-602P / FX-603P Simulator and the HP-45 Emulator are hosted here. -
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Library of Java code to interact with the data-recording formats (RPFITS and PSRFITS) used at the Australia Telescope National Facility (ATNF). It also provides tools for extracting metadata from the files for supply to Virtual Observatory instances.
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JAGS is Just Another Gibbs Sampler. It is a program for the statistical analysis of Bayesian hierarchical models by Markov Chain Monte Carlo.
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BBMap
BBMap short read aligner, and other bioinformatic tools.
This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. ... -
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This project delivers Linux support (USB driver and Tools) for a Digital Signal Processor (DSP) cards of the Signal Ranger series, see http://www.softdb.com/product_dsp.shtml for details) connected to a Linux host via USB.
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SAGA - System for Automated Geoscientific Analyses - is a Geographic Information System (GIS) software with immense capabilities for geodata processing and analysis. SAGA is programmed in the object oriented C++ language and supports the implementation of new functions with a very effective Application Programming Interface (API). Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting...
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Avogadro
An intuitive molecular editor and visualization tool
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture. -
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Stand-alone application and Python tools for interactive and/or batch processing analysis of X-Ray Fluorescence Spectra. Graphical user interface (GUI) and batch processing capabilities provided.
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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OpenJUMP is a community driven fork of JUMP the "Java Unified Mapping Platform" GIS software. The original JUMP was developed by Vivid Solutions, released under GPL2 in 2003 and discontinued in 2006. During 2004 already some enthusiastic developers joined together to enhance further the features of JUMP. They launched an independent development branch called OpenJUMP. The name gives credit to the original JUMP development, and at the same time describes the objectives of this project to...
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GWtool
Simple tools for working with gravitational waves
GWtool: simple tools for working with gravitational waves -
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Simulation of Urban MObility
SUMO is a microscopic, multi-modal traffic simulation.
SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation. The code and the issue tracker can be found at https://github.com/eclipse-sumo/sumo/ The documentation can be found at https://sumo.dlr.de/docs/ -
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...This will give you the most complete development toolchain to create and program 8-bit PIC, AVR and LGT microcontrollers. We have added new capabilities that make GCBASIC the easiest tool set available - supporting over 1400 microcontrollers with tools to make this fun and simple. Please see the download section for your options. We have two IDEs, we have just the compiler and we have a minimal install - it is your choice. Please see the homepage here: https://gcbasic.com
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
