Search Results for "readme"
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23 projects for "readme" with 2 filters applied:
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CBIG
Computational Brain Imaging Group tools
CBIG is a comprehensive toolkit maintained by Thomas Yeo’s Computational Brain Imaging Group containing tools for processing and analyzing neuroimaging data—including fMRI preprocessing pipelines, brain parcellation algorithms, mental disorder subtyping models, fMRI dynamic models, registrations between brain spaces, and phenotypic prediction algorithms. After cloning/downloading this repository, please see README inside setup directory to see instructions on how to set up your local environment to be compatible with our repository. Brain parcellation tools (e.g., Yeo networks, Schaefer parcellations) for cortical mapping. -
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PyQuil
A Python library for quantum programming using Quil
...Without installing anything, you can quickly get started with quantum programming by exploring our interactive Jupyter Notebook tutorials and examples. To run them in a preconfigured execution environment on Binder, click the "launch binder" badge at the top of the README or the link here! To learn more about the tutorials and how you can add your own, visit the rigetti/forest-tutorials repository. If you'd rather set everything up locally, or are interested in contributing to pyQuil, continue to the next section for instructions on installing pyQuil and the Forest SDK. -
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FairChem
FAIR Chemistry's library of machine learning methods for chemistry
...Tasks span heterogeneous domains—catalysis (OC20-style), inorganic materials (OMat), molecules (OMol), MOFs (ODAC), and molecular crystals (OMC)—allowing one model family to serve many simulations. The README provides quick paths for pulling models (e.g., via Hugging Face access), then running energy/force predictions on GPU or CPU. -
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Leibnitz
Electronic paper for computations and graphs
Leibnitz is the calculator you've always wanted (even if you didn't know it!), short of handwriting recognition. FAQ: https://github.com/jafl/jx_application_framework/tree/master/programs/leibnitz#readme ChangeLog: http://leibnitz.sourceforge.net/ChangeLog.html -
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The Simplest Manual Counter
Manual counter with the keyboard or the mouse on images
The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location. Such a project is so simple a child could use it! -
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The libbuspirate is a C library to talk with the bus pirate hardware (http://dangerousprototypes.com/docs/Bus_Pirate) in raw, binary scripting mode. The libbuspirate allows to quickly write a short C program to test interfacing with your favorite hardware. The library has mainly be used to interface through SPI with RF transceivers such as CC2500, MRF24J40, Ethernet controller such as ENC28J60, EEPROMs such as 24C02, 24FC1025, LCD display (PCD8544 / Nokia5110), LED display (HT1632), ......
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bnf2xml
simple BNF parser makes xml markup of matches
bnf2xml a simple BNF parser that takes text as input, searches according to a BNF query file, and outputs text marked up by the xml labels that show context. bnf2xml is as simple to use as any text binary ie, awk(1) grep(1). bnf2xml does not require C API because it outputs simple xml labeling. README is visible on file dl page. EXAMPLE: $ echo "hi" | bnf2xml patternfile <word><alph>h</alph><alph>i</alph></word> or <gas>hydrogen iodide</gas> patternfile says how to find needle in haystack and what to show, ie: <alph> ::= a | b | c | d ... <word> ::= <alph>+ bnf2xml is a top down recursive parser. Unlike buttom up parsers like gcc(1) or some top downs, bnf2xml is completely unambiguous / resolves ALL conflicts. ... -
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MuffinEC
Multi-technology, INDEL aware error correction for NGS data
...The beta version is already available online. The changes are listed in the VERSION_HISTORY file. Please report any problem you may encounter at the email address specified in the README file. We really appreciate your help. -
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xlsLib
C++/C library to construct Excel .xls files in code.
...Unlike .csv files, these can be directly opened by Excel and thus provide an excellent way to output large data sets that require further analysis. To see the latest changes, select "Files" and view the README text displayed at the bottom of that pane. IMPORTANT: Major changes are contained in the current SVN source. If you have time please try to use it or the xlslib-package-2.4.0b1.zip archive, and enter bug reports on any problems! Changes: - library specific strings now in their own namespace - iOS Objective-C library - most project files updated (MSVS etc) - C bridge now supports formulas Note: there is a related SF project, libxls, to read Excel files. -
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autodiff
Python class for automatic differentiation
...Supported operators: +, -, *, /, **, +=, -=, *=, /=, **= Available functions: sin, cos, tan, asin, acos, atan, sqrt, exp, log, log10, sinh, cosh, tanh, asinh, acosh, atanh See README file for usage examples. -
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PNGwriter
Easy plotting of images pixel by pixel!
Frustrated because you want to output a high-quality image from your C++ program but haven't found an easy, direct and fast way? Try PNGwriter. Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than 0.5.5. The PNGwriter website is still hosted on SourceForge.net: http://pngwriter.sourceforge.net Thank you! ... -
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bagemass
Bayesian age and mass estimates for transiting planet host stars
Source code, makefile and README for installation of software used for the analysis in Maxted, Serenelli & Southworth, "Bayesian mass and age estimates for transiting exoplanet host stars", A&A 575, 36, 2015. -
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galplot
Plot GALPROP output
...It requires many input data files (not included) which will be made available as required. With the data provided cosmic-ray spectra and ratios and source population synthesis will work. Uses CERN root package. See README for details. Plots produced with GALPLOT can be seen in http://arxiv.org/abs/1101.1381 http://adsabs.harvard.edu/abs/2011A%26A...534A..54S http://adsabs.harvard.edu/abs/2011ApJ...739...29B and http://arxiv.org/abs/1309.2947, published version: http://mnras.oxfordjournals.org/content/early/2013/10/03/mnras.stt1718.abstract . ... -
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MathX
Fixed-length Arithmetic-types library
...To this moment, only signed-integer and unsigned-integer are completed for little-endain architecture. Any compiler that support c++03 or c++11 can successfully compile MathX. Refer to README for more information. -
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BioLemmatizer
Lemmatization tool for morphological analysis of biomedical literature
...It focuses on the inflectional morphology of English, including the plural form of nouns, the conjugations of verbs, and the comparative and superlative form of adjectives and adverbs. README: https://sourceforge.net/projects/biolemmatizer/files/ The BioLemmatizer 1.2 release adds an optional functionality to normalize British English spellings into American English spellings and then retrieve corresponding lemmas. If you use the BioLemmatizer to support academic research, please cite the following paper: Haibin Liu, Tom Christiansen, William A Baumgartner Jr, and Karin Verspoor BioLemmatizer: a lemmatization tool for morphological processing of biomedical text Journal of Biomedical Semantics 2012, 3:3. -
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...We now output JSON objects and I'm working on HBase integration. By outputting to JSON it also leaves open the possibility for on the fly in memory correlation between events. Read the included README before starting, it has a quick start guide and info on the constructors.
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nwhess2freq
Calculates frequencies/modes from an nwchem generated hessian
...The advantage of having a separate script for this is that you can use the same hessian to calculate frequencies for different isotopic substitutions i.e. you only have to run one nwchem calculation. The script is finished in its current form in the sense that it is feature complete. Feel free to amend, translate, copy, steal etc. See the README in the code repository for instructions. Installation: Simply download the file and start Octave in the download directory. -
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MICROMECHANICS
A collection of lecture notes and accompanying code on micromechanics
The collection MICROMECHANICS (micromechanics.zip) includes: (1) lecture notes (microbook.pdf) on the analysis of heterogeneous materials and homogenization, and (2) source codes (microcode.tar.bz2) that accompany the computational exercises in Part II of the notes. Instructions on using the codes are given in the README file of each exercise. Further instructions can be found in the file microcode.tar.bz2. The MATLAB codes are used for visualization, evaluating analytical bounds and estimates as well as in the generation of digital and particulate microstructures. The Fortran codes are based on the finite element method in linear and nonlinear settings, the latter capable of finite deformations with damage. ... -
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
...Both are written to be as lightweight as possible so they can run with minimal memory-requirements on a desktop or laptop as well as on a compute cluster. If you have any problems with QUASR, please do contact me at the email address provided in the README. -
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Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
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A free VHDL IPs for general purpose FPGA developpement. Need GRLIB to work properly, to setup see README.
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VisualSense was developed to serve as an analysis tool for textual and numerical data extracted from image analysis of artwork from different cultures and influences. It can be used for any kind of data respecting the format (specified in the README)
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CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.
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