Search Results for "mapper"
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23 projects for "mapper" with 2 filters applied:
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Hibernate
An object relational-mapping (ORM) library for Java
The Hibernate projects offer a suite of powerful Java libraries to work with data. It is best known for Hibernate ORM, which provides relational persistence for Java models and is an implementation of the Jakarta Persistence specification. Hibernate projects do not consistently release binaries or documentation to SourceForge anymore. For up-to-date information, refer to the Hibernate website: * Hibernate ORM: https://hibernate.org/orm/ * Hibernate Validator:... -
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OpenVigil
Open pharmacovigilance data extraction, mining and analysis tool
...OpenVigil 2 supports query for ATC codes or certain chemical moieties. Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm. -
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TreeGraph
Information Manager(split/analyze/compare/combine).
For Homepage, Blog, Family Tree, Database, C#|hjt|js|chm Editor. Convert hjt2xml, (c#)cs2xml, chm2xml, js2xml, xml2cs, xml2js, xml2hjt, cs2hjt, hjt2cs, cs2chm, hjt2chm. IE/Opera/Firefox/PocketPC supported. -
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Lattice Miner is a data mining prototype for creating, visualizing and exploring concept (Galois) lattices. It allows the generation of formal concepts and association rules.
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data. -
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OpenOrienteering
Former project page
See https://www.openorienteering.org/apps/mapper/ -
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smalt
A mapper for DNA sequencing reads
SMALT aligns DNA sequencing reads with genomic reference sequences. It employs hashing combined with dynamic programming. -
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A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
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El proyecto central es la conformación de un Sistema de Información Hospitalaria, se pretende ir por subproyectos los cuales formaran las piezas fundamentales que se integraran mediante perfiles IHE que vayan estableciéndose para la norma HL7v3
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SOCS
SOCS is a SOLiD read mapper with bisulfite sequencing support.
SOCS performs ungapped alignment of SOLiD (color space) sequencing reads against reference sequences. Modes are available for detecting short sequence-space variants (such as SNPs) and for detecting unlimited numbers of bisulfite-induced nucleotide substitutions for 5mC methylation studies. -
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SyMBA is a Data Archive and Integrator that is based on the Functional Genomics Object Model (http://fuge.sf.net) and which archives, stores, and retrieves raw high-throughput data. See http://symba.sf.net and http://www.cisban.ac.uk
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BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.
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SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.
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The NetEpi project is developing open-source, network-enabled tools for epidemiology and public health practice.
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The metabolomics standards initiative (msi) will develop a Core Information for Metabolomics Reporting (CIMR) recommendation and a more formal and semantically defined corresponding ontology (msi-ontology).
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The NS-Mapper ad-hoc scenario editor is improved and extended by adding more realistic strategies, such as random based node placement, movement and traffic to the ad-hoc simulation of the Network Simulator 2 (NS-2).
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JXML2OWL Project is divided in two sub projects: JXML2OWL API, a library for mapping XML schemas to OWL Ontologies on the JAVA plaform. JXML2OWL Mapper, an easy to use standalone application with a graphical user interface using the JXML2OWL API.
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Maiden-core is a Linux kernel robotics API module, extensible in Erc. The Maiden Project also documents and develops the Maiden architecture for mobile robots, a set of (optional) designs and standards for robots using the Maiden-core API.
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jLips is a lightweight Java persistence container that implements database persistence through Java interfaces through a defined field naming scheme. Can be used with any JDBC database. jLips has a very small footprint and a simple interface.
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Append hundreds of different XML files into one large data document, validate, and attach a stylesheet. Stitcher is a porwerful summary reporting tool. Allows for complex file storage locations of xml data. UBL, HR-ML, LandXML ... visit stitcher.org.
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