Search Results for "2010"
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20 projects for "2010" with 2 filters applied:
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BIGSdb
Software for storing and analysing bacterial sequence data
...The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. These loci can be further organised into schemes for isolate characterisation or for evolutionary or functional analyses. See Jolley and Maiden 2010, BMC Bioinformatics 11:595 (http://www.biomedcentral.com/1471-2105/11/595). You can report bugs or make enhancement requests using the issues tracker at https://github.com/kjolley/BIGSdb. The source code is also mirrored there. -
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...It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
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AnalyzeNNLS
MRI Multiple Echo T2 Analysis
...AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010). Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013). -
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Virastyar
Virastyar is an spell checker for low-resource languages
...It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for processing low-resource languages, especially Persian and RTL languages Publications: Kashefi, O., Nasri, M., & Kanani, K. (2010). Towards Automatic Persian Spell Checking. SCICT. Kashefi, O., Sharifi, M., & Minaie, B. (2013). A novel string distance metric for ranking Persian respelling suggestions. Natural Language Engineering, 19(2), 259-284. Rasooli, M. S., Kahefi, O., & Minaei-Bidgoli, B. (2011). Effect of adaptive spell checking in Persian. In NLP-KE Contributors: Omid Kashefi Azadeh Zamanifar Masoumeh Mashaiekhi Meisam Pourafzal Reza Refaei Mohammad Hedayati Kamiar Kanani Mehrdad Senobari Sina Iravanin Mohammad Sadegh Rasooli Mohsen Hoseinalizadeh Mitra Nasri Alireza Dehlaghi Fatemeh Ahmadi Neda PourMorteza -
99.99% Uptime for MySQL and PostgreSQL DatabasesCloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
...The mwetoolkit can be applied to virtually any text collection, language, and MWE type. It is a command-line tool written mostly in Python. Its development started in 2010 as a PhD thesis but the project keeps active (see the SVN logs). Up-to-date documentation and details about the tool can be found on the mwetoolkit website: http://mwetoolkit.sourceforge.net/ -
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codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE). For more details, follow the link: http://mbe.oxfordjournals.org/content/30/6/1270. codonPhyML is on the cover of MBE! Check this out...
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EMsieve
A simple sieve/prefactor program for Eisenstein-Mersenne Primes
...After sieving, the Berrizbeitia-Iskra or a Proth test can be run; this is best implemented with FFT mod (3^3p+1) using GWNUM library. A sample implementation (a patch to the LLR program) is available from Batalov. [1] P.Berrizbeitia B.Iskra, 2010; http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.189.311 [2] OEIS: http://oeis.org/ -
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ConoSorter
A Large-scale Cone Snail Transcriptome/Proteome Analysis Program
ConoSorter is a high-throughput standalone program that implements regular expressions and profile Hidden Markov Models (pHMMs) for large-scale identification and classification of precursor conopeptides into gene superfamilies and classes based on the ER signal, pro-, and mature conopeptide regions generated from raw next-generation transcriptomic or proteomic data. ConoSorter also generates a set of relevant additional information (frequency of protein sequences, length, number of... -
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LibreEngineering - suite of instrumentation, electrical, mechanical, process engineering calculation and design programs and other tools. Licensed under GPL3. Written in Python with Qt toolkit.
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IsItPrime
A small, basic, yet powerful and competent primality tester.
IsItPrime is a powerful, cross-platform, multi-threaded standalone application capable of testing massive numbers in several ways through a highly interactive and easily-understood user interface. As of version 2.0.0, IsItPrime and other NCPrime applications no longer require the Visual C++ 2010 Redistributable for Windows. All NCPrime applications released after 1 November 2012 use the Qt framework and thus require Qt libraries (included) for cross-platform compatibility. IsItPrime is in active development. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
...Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287 Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362 Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216 Banks et al. 2012 http://dx.doi.org/10.3791/4018 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster: https://github.com/CnrLwlss/Colonyzer -
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BADGr
Toolbox for Box Approximation, Decomposition, and Grasping
...The toolbox was developed in the Computer Vision & Active Perception Lab, at the Royal Institute of Technology, as a participant of the EU research project PACO-PLUS, and published at the project's end in Summer 2010. BADGr provides modules to approximate the shape of a point cloud (possibly from sensor data) by box primitives. These box primitives then serve as a base for the generation of box-based pre-grasp hypotheses for robot grippers. -
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Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
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MQTT for NS-3
NS-3 libraries for MQTT
NS-3 libraries for simulating environments with the MQ Telemetry Transport (MQTT) protocol. For more information go to the Wiki. You can see a guide of how to integrate this library into the NS-3 here: http://www.eg.bucknell.edu/~perrone/2010/08/27/creating-a-new-module-in-ns-3/ -
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Small set of utilities used by the 2010 iGEM Mexico-UNAM-CINVESTAV Team to automate biobricks from files
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tXtFL is a strategy-based football simulator. Teams can be created from real stats on the web, built through custom designed plays, and then used to coach games or predict scores. Note that as of 2010, all new development is taking place at http://textflex.com/txtfl.
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A particle swarm optimization demo written by students in the digital communication msc program (2010) at uni-kiel.
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Hier wird die Versionsverwaltung (SVN) für die LaTeX-Mitschrift der Vorlesung "Analysis für Informatiker und Statistiker" gehostet. Diese findet im WS 2009/2010 an der LMU München statt.
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...Fast Principal Components Analysis method for finance problems with unequal time steps. In P. L'Ecuyer and A. B. Owen, editors, Monte Carlo and Quasi-Monte Carlo Methods 2008, Springer Verlag, 2010
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