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Tools for finite automata simulation, minimization and grammar utilities (left recursion removal, context free grammar simplification and transformation to Chomsky Normal Form).
This project aims to develop a cross platform environment for utilisation of various open source and freely available molecular dynamics and bioinformatics tools. Some extra features are included such as protein hydrophobicity and hydrophilicity plots.
Spectre for mass spectrometry. (Quantitiave) analysis of multiple ls-ms(ms) runs, using mzXML import of raw data. (working on mzDATA). Provides filters, alignment- and export tools.
The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.
Triple-A (Automatic Analysis with Automata) is a full-featured library for (finite) automata written in Java with two powerful analysis tools (dealing with LTL model checking and Presburger arithmetics) and a graphical user interface built around it.
OpenTAPAS: Technology Assisted Practice Application Suite (TAPAS) is a term that describes digital tools that assist physicians deliver care in a paper based office. OpenTAPAS builds upon the HL7 compliant Electronic Medical Summary Standard
A visualizer for FRAM (Functional Resonance Accident Model), a JCS-model developed by Erik Hollnagel at LiU, Sweden. This tool helps modelling the the FRAM table and visualize it. This project has moved to http://code.google.com/p/framvisualizer/
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
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AGTK is a suite of software components for building tools for annotating linguistic signals,
time-series data which documents any kind of linguistic behavior (e.g. audio, video).
The internal data structures are based on annotation graphs.
A Open Source 3D Immersive simulation environment, like the "second life", with some distribuited processing tools, to make the GRID power growup with every new node (client machine) attached.
Set of Ant filters that can be used to gather statistics from files or resources. It is mainly used for log files analysis. It allows to: - count inputs - count occurrences of each input - calculate average, max and min values of floats in input
Signs is a development environment for hardware designs in VHDL and other hardware description languages. It provides synthesis and simulation tools which are fully integrated in an Eclipse plugin including graphical netlist and waveform viewers.
Misc packages including a matrix application, a text based minesweeper, and simple console functions bundled to be run from a virtual console. Some packages are independently runnable. http://damf.sourceforge.net/ for more information.
Metaquokka is a highly configurable xml editor, currently available as Gridsphere portlet. Besides the default format, there is suppoert for ESysXML, a simulation description scheme for a geodynamics framework. Supports Generic Mapping Tools rudimentary.
A set of software components used to investigate and implement searching of music and audio. This covers content-based retrieval and meta-data based solutions, segmentation and content selection (summarisation) of audio and music (MIDI, MP3 and WAV).
MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.
Software Development Toolkit and Libraries to support the adoption of MIMOSA and Open O&M Initiatives. The libraries and toolkits will focus on basic implementation of DAO, XML, and Web Service tools.
Vizumine helps the data analyst to extract information of the data. It creates association rules of a large set of items and provides tools to analize these rules.
Blubber system is an Eclipse RCP application for distributed systems modeling. Designed for university researches and inlcudes: task graph editor; graph transformation tools; graph modelling on distributed system; real-time modelling on GerdaFramework.