Search Results for "java modelling tools"

This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. ...

An extensive description of this system is published in the Journal of Translational Medicine (http://www.translational-medicine.com/). In brief, the system consists of two main web applications, a data integration app and a data exploration app. The data integration app is a fully custom Java "Web 2.0" product called Sherpa. Sherpa uses Seam, a platform integrating Asynchronous JavaScript and XML (AJAX), JavaServer Faces (JSF), the Java Persistence API (JPA), and Enterprise Java Beans...

OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting...

A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data

Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)

Razor is a set of Java- and JOGL-based medical image tools which can be composed into a standalone application or integrated into other medical imaging applications. Via JOGL, Razor uses OpenGL to enhance and accelerate some medical imaging functions.

OpenVista(R) is the open-source version of VistA, an enterprise grade health care information system developed by the U.S. Veterans Affairs and deployed at 1,500 global facilities. OpenVista is a registered trademark of Medsphere Systems Corporation

HELEN is a flexible framework to support the computer-based management of Clinical Practice Guidelines (CPG). It covers the whole life-cycle of a guideline, providing methods and tools for each step (from development to clinical use).

The development and curation of a range of XML-based tools for using Chemical Markup Language (CML), including XSD XML Schemas for validation, datatyping and constraining CML documents and XSLT Stylesheets for transforming, filtering and rendering.

Software tools for visual psychophysics research. The focus of these tools is amblyopia research, but they can be used in some related visual neuroscience research tasks.

This project aims to make open source tools for medical Studies of Diagnostic Accuracy, wich are neglected by most commom statistical tools. Most tools will be based on the STARD.

Tools designed to assist in creating and using the RadLex ontology (http://www.radlex.org).

Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f

OpenTAPAS: Technology Assisted Practice Application Suite (TAPAS) is a term that describes digital tools that assist physicians deliver care in a paper based office. OpenTAPAS builds upon the HL7 compliant Electronic Medical Summary Standard

A Medical Information System (MIS) Application Server based on Web Services and J2EE and administrative tools (Plugins for Eclipse,...)

OpenCCAM : - Coding tools for the french CCAM (Classification Commune des Actes Médicaux) - Outils d'aide au codage pour la CCAM

Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.

this java project creates a simple user interface with some basic statistical tools to access the Eye Express(tm) Eye tracker hardware. Including serial port access, etc.

In the focus of the AURECON project of GMD FIRST and Humboldt University of Berlin tools for timetabling and resource-scheduling for medical units are developed. To test this tool a hospital-scenario generator was developed that shall offered via sourcef