Search Results for "linux command" - Page 34
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1524 projects for "linux command" with 2 filters applied:
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The DNA Sequence Read Toolkit is a set of programs to convert data from DNA sequencing instruments into formats suitable for archiving, viewing or for onward processing (for example alignment or assembly).
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FusionMiner is a molecular biology program which accepts genomic alignments in BLAST/BLAT tabular output and attempts to find true fusion transcripts. A single command runs the pipeline and generates results.
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Metmask has moved to github http://github.com/hredestig/metmask Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.
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Small set of utilities used by the 2010 iGEM Mexico-UNAM-CINVESTAV Team to automate biobricks from files
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traveling-salesman is a GPS -route-planning and -navigation -system based on libosm and the OpenStreetMap.
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CIVx is a free advanced PIV (Particle Imaging Velocimetry) code, developped in Fortran and C++. Input : pair of png images. Output : velocity field in NetCDF format. It is used by the UVMAT Matlab code develloped at LEGI.
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DTMF detector library and/or application that reads in the specified audio file and returns/outputs whether DTMF detected and/or list of detected digits. May have GUI and command line interfaces.
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The Lidy project is a small cross-platform library under LPGL licence, written in C language. It has been designed in order to facilitate the sparse matrices handling.
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This package, for R environment, detects DAE peaks ratio on data gotten from LightCycler instrument.
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GeoDress is a program for reverse geocoding of JPEG pictures with a simple GUI and even a command-line interface.
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clac (Command Line Advanced Calculator) evaluates mathematical expressions from the argument list or from stdin and writes the answer(s) to stdout.
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This tool is designed to solve generalized pattern matching problem, by which we only find a set of sub-patterns, ignoring the gaps in between the sub-patterns. This tool is extremely fast and also has good tolerance to errors.
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OpenThermo
Statistical thermodynamics package
OpenThermo is a program package for statistical thermodynamics computations beyond rigid rotor - harmonic oscillator approximation -
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Simple use of javadbf (http://javadbf.sarovar.org) class. Allows import / export files from a Siemens Step7 project . Allow to put your logic files under SVN o similar (easy and fast!) NEW VERSION IS READY, NO CONFIGURATION NEED!
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Parallel Port Control Made Easy - parashell allows control of a PC parallel port (input and output) with simple command line arguments. The simplicity of these programs make it very easy to use in scripts. Control stepper motors, Relays, LEDs, etc...
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An R package for detailed inspection and analysis of LCMS data. An R package developed by Sukhdeep Singh at Department of Surgery and Cancer, Imperial College London,UK.
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The SELENA and RISe software tools are two packages to assist in computing earthquake damage scenarios. The damage probability for any specific structure follows the computation principles of HAZUS.
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FAS-DPD is a program to design degenerate primers for PCR.
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Implementation of the PowerWatershed algorithm (q=2) described in the following paper (ICCV 2009) http://www.esiee.fr/~najmanl/papers/couprie2009iccv.pdf
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qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
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A branch-and-prune method to find all solutions to systems of nonlinear equations. The number of variables must equal the number of equations. The variables must have proper lower and upper bounds. The solver has an interface to the AMPL environment.