1524 projects for "linux command" with 2 filters applied:

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  • 1
    iMS2Flux
    iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS. Current version 7.2.1 (last updated 9/30/2014) - Completes support and correction functionality for a new user specified generic data class. See the change log for full details.
    Downloads: 1 This Week
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  • 2

    Brandy Basic V Interpreter

    Brandy is an interpreter for BBC Basic

    Brandy is an interpreter for BBC Basic (or Basic V) that runs under a variety of operating systems. Basic V is the version of Basic supplied with desktop computers running RISC OS. These were originally made by Acorn Computers.
    Downloads: 2 This Week
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  • 3

    MThreaded/OO NIST Statistical Suite

    Multithreaded & OO NIST Statistical Test Suite (C++ version)

    This project is a Multithreaded & OO C++ version of NIST Statistical Test Suite which has been developed by Juan Soto in 1999. This is object oriented so that you can use it easily in your programs. Also you can use the power of parallelism cause it is multithreaded. Enjoy it!
    Downloads: 0 This Week
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  • 4
    trafalgar.map

    trafalgar.map

    Open Street Map (OSM) tools, OSM/XML parser, tag extractor

    This is going to be a set of tools which is intended to be used with huge OSM files like the planet files in XML format. The parser reads directly from packed *.gz files and it is not needed to unpack the OSM/XML data files to the local disk. Now in 0.3.0: osm_tags: tag analyzer (like tag watch) osm_split: split osm file in single files for nodes, ways and relations and collect some meta information (will be used as input for other tools). osm_cut: create rectangular...
    Downloads: 0 This Week
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  • 5
    SFrame is a C++ framework built around the ROOT libraries for analysing particle physics data. It gives a very high performance for processing data, by allowing the user to run his/her code on a distributed farm of machines.
    Downloads: 0 This Week
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  • 6

    nail_systems_biology

    NAIL is a toolset for network analysis in the life sciences

    The NAIL (Network Analysis and Inference Library) project is a set of tools for solving problems in the life sciences using network (graph) approaches. NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line. Modelling biological systems as networks (graphs) is becoming a...
    Downloads: 0 This Week
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  • 7
    fzcal

    fzcal

    A calculator capable of complex arithmetics

    A command line calculator capable of complex arithmetics.
    Downloads: 0 This Week
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  • 8
    This toolbox defines a new mp class allowing multiple precision objects in Matlab via a library of mex interfaces to the GNU Multiple Precision Arithmetic Library and The MPFR Library.
    Downloads: 0 This Week
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  • 9

    CUSHAW2: Parallel Gapped Read Alignment

    One of the leading short-/long-read aligner to large genomes

    CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads.
    Downloads: 0 This Week
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  • 10

    phpBathymetry

    Using PHP-CLI to parse NMEA data to generate depth maps with GD

    Using PHP-CLI to parse NMEA data to generate depth maps with GD. As fishing is a passion of mine,and it got me to consider using the NMEA formatted data output from my Lowrance 5-DSI Elite to generate a bathymetric map of the lake at my cottage. It is currently very crude, just a bunch of CLI scripts that record NMEA data, and the other parses the stored data and builds a depth, water temperature and sample frequency map.
    Downloads: 0 This Week
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  • 11

    DRAMMS

    A Deformable Medical Image Registration Toolbox

    DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse...
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    Downloads: 4 This Week
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  • 12
    openGPS
    Open Source Implementations for 3D-Surface Characterisation Algorithms according to ISO 25178 (Geometric Product Specification) in verifiable pseudocode (MATLAB). Implementation of an XML-based file exchange format according to upcoming ISO 25178-72.
    Downloads: 0 This Week
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  • 13

    JUnit Execution & Report Generation Tool

    Runs JUnit Test cases and generate HTML report, keeps past run history

    This tool pulls all JUnit testcases from the class path and run them all. After completion of test case execution it populates the result in database tables. A report tool fetch the result data from database and produce an HTML report. Highlights of this tool - No coding effort is required from developer to integrate existing JUnit test cases. They just need to put their test case folder to the class path - Since it keep the test result data in a database, it can keep history of...
    Downloads: 0 This Week
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  • 14

    FLASH

    Merge mates from fragments that are shorter than twice the read length

    FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies.
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    Downloads: 34 This Week
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  • 15

    Serapis

    System for the evacuation and relocation of affected pop. in shelters

    Serapis can be used to simulate the mass evacuation of a population from a city with constraints on transport network. Contrary to other similar software, Serapis does not simulate the full transport but focus only on throughput of congestion points. It allows to differentiate between the behaviours and possibilities of different categories of population (children, elderly people, disabled...).
    Downloads: 0 This Week
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  • 16
    The Khepera III Toolbox is a collection of scripts, programs and code modules for the Khepera III robot. It allows for easy access to all sensors and actuators of the robot and provides a lot of standard programs.
    Downloads: 0 This Week
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  • 17
    Travel Market Simulator
    That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.
    Downloads: 0 This Week
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  • 18
    Pulse Programmer
    A programmable signal generator and RF synthesizer for scientific experiments, especially quantum computing and quantum information processing. It includes hardware, firmware, software, and documentation, all under an open source license.
    Downloads: 0 This Week
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  • 19

    Hrothgar Parallel LM/MCMC Minimizer

    A versatile MCMC and downhill optimization engine

    Hrothgar is a parallel minimizer and Markov Chain Monte Carlo generator by Andisheh Mahdavi of San Francisco State University. It has been used to solve optimization problems in astrophysics (galaxy cluster mass profiles) as well as in experimental particle physics (hadronic tau decays). It is probably adaptable enough to be applied to your merit function if you can write it in C.
    Downloads: 0 This Week
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  • 20
    GTfold
    A Scalable Multicore Code for RNA Secondary Structure Prediction
    Downloads: 0 This Week
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  • 21

    manticora

    ternary logic calculator

    Some scripts for boolean calculation, including a parser. Ternary logic support. Everything is written in Posix Sh.
    Downloads: 0 This Week
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  • 22
    Graph-RAT
    Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
    Downloads: 0 This Week
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  • 23
    Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.
    Downloads: 0 This Week
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  • 24
    The MAGE-TAB Utilities project provides a simple Perl SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. All file releases are now being made via CPAN.
    Downloads: 0 This Week
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  • 25
    PatchCatcher

    PatchCatcher

    Software for Patchwriting Detection

    PatchCatcher uses suffix arrays to detect common types of patchwriting among scientific papers.
    Downloads: 0 This Week
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