Search Results for "soft-ice"
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Showing 62 open source projects for "soft-ice"
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HOOMD-blue
Molecular dynamics and Monte Carlo soft matter simulation on GPUs
...It was designed from the ground up for GPU acceleration, with a high-performance C++ and CUDA backend. The software is especially useful for nano-scale, colloidal, polymer, soft matter, and materials simulations. Its Python interface lets users build simulation and analysis workflows using familiar scientific Python tools. HOOMD-blue supports efficient parallel execution and has been used for large-scale GPU-based simulations. Its main value is combining a flexible Python user experience with strong GPU performance for modern particle simulation research. -
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ESPResSo
The ESPResSo package
...ESPResSo is controlled through Python, which makes it flexible for custom simulation setup and analysis. Its main value is giving soft matter researchers a versatile and extensible platform for studying many-particle systems beyond simple atomistic models. -
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LAMMPS
Public development project of the LAMMPS MD software package
...It is designed for high-performance computing and can run efficiently on desktops, clusters, and supercomputers. The software is widely used in materials science, chemistry, physics, nanotechnology, soft matter, and computational engineering. It supports many interaction models, including pair potentials, many-body potentials, reactive force fields, bonded interactions, long-range electrostatics, and user-extendable packages. LAMMPS is script-driven, so users can define simulation geometry, force fields, integration methods, output, and analysis behavior through input files. ... -
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A series of open source files and programs available to use for developing programs to work with the WowWee Robotics RSMedia Robot. These include a USB serial console, a cross-compiler, a firmware dump program, text-to-speech and source code.
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epics-sequencer-HZB
The EPICS SNL Compiler and Sequencer
The Sequencer implements a language for programming state machines with the EPICS framework. EPICS is developed collaboratively and used worldwide to create distributed soft real-time control systems for large scale scientific instruments. SNL borrows most contructs from the C programing language and adds some new statements for defining states and conditions for transitions between states. -
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DEVS-Suite Simulator
Component, CA, and CCA models; superdense time, ETL DB, testing, etc.
Integrated component-based and cellular automata (CA) Parallel DEVS simulator. Version: 8.0 [Aug `26], 7.0 [Jan `23], 6.1 [Apr. `21], 6 [Sep. `20] , 5 [Jul. `19], 4 [Mar. `18], 3 [Apr. `15], 2.1 [Feb. `09], 2 [`03] See PVM: Visual Persistent Hierarchical Component-based Modeler (https://acims.asu.edu/persistent-visual-modeler/ ) and CoSMoSim: hierarchical visual modeling, database model repository, families of models, statecharts, partial-code generation for XML/DEVS-Suite models... -
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Image16
Image viewer/editor specialized in astrophotography 16bits processing
Opens/saves TIF, FITS, PNG, XISF, PXM, RAW, JPG, XCF, PSD, WEBP. AsinH, Sqrt, Ln, Exp and Sqr stretching, HSL and RGB adjusting, Levels and Curves adjusting and Background Extraction for Color Balance, Flatness and Gradient Correction. Arithmetic between images. Resizing and croping. Color Balance based on background, selection or stars B-V (after platesolving). Debayering/Bayering. Inversion, mirroring, rotation, barrel/pincushion correction. RGB alignment/shifting. Erode, Dilate, ...... -
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DeepChem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, etc
DeepChem aims to provide a high-quality open-source toolchain that democratizes the use of deep learning in drug discovery, materials science, quantum chemistry, and biology. DeepChem currently supports Python 3.7 through 3.9 and requires these packages on any condition. DeepChem has a number of "soft" requirements. If you face some errors like ImportError: This class requires XXXX, you may need to install some packages. Deepchem provides support for TensorFlow, PyTorch, JAX and each requires an individual pip Installation. The DeepChem project maintains an extensive collection of tutorials. All tutorials are designed to be run on Google collab (or locally if you prefer). ... -
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Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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SimpleDCS is a Distributed Control System made easy - fully configurable both on hardware and a software level. Experimental stage (alpha)
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SDC
SDC facilitates development of dist. systems of medical devices.
...It is based on the upcoming SDC standard, which is specified by the IEEE in IEEE Std 11073-20702-2016 (Point-of-care medical device communication Part 20702: Medical Devices Communication Profile for Web Services), IEEE Std 11073-10207-2017 (Point-of-care medical device communication Part 10207: Domain Information and Service Model for Service-Oriented Point-of-Care Medical Device Communication), and P11073-20701 (IEEE Draft Standard for Service-Oriented Medical Device Exchange Architecture & Protocol Binding). The SDC standard has the goal to meet increasing demand for medical device interoperability in an Integrated Clinical Environment (ICE), see also ASTM F2761-1:2009. OpenSDC is not intended to be used in clinical trials, clinical studies, or in clinical routine. -
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DiInSo
DiInSo is orient to solve 3D direct and 2D/3D inverse problems of ERT
'Direct-Inverse Solver' (DiInSo) is an electrical resistivity tomography (ERT) software which orient to solve 3D direct and 2D/3D inverse problems on direct current (DC). X86 version of DiInSo is totally free and can be use in scientific purposes, but it also has not any guarantees, so use DiInSo at your own risk. READ CAREFULLY NEXT IMPORTANT MESSAGE NEVER use BLANKS and try to use only ENGLISH SYMBOLS in directories, filenames, paths and names of problems in program DiInSo. It is... -
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This program calculates excitation energies E0 and E2 transition strengths within the "Confined Beta Soft" nuclear structure model as described in [N. Pietralla and O. M. Gorbachenko, Phys. Rev. C 70, 011304(R) (2004)]. Parameter fits are possible.
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PHIPS Probe Analysis
Scripts that read and process PHIPS data
This repository contains python scripts that read in and process Particle Habit Imaging and polar scattering probe (PHIPS). Majority of the scripts will be geared towards the PHIPS on-board the Citation-II N555DS aircraft during CAPEEX19 experiment. Classifications of the PHIPS particles were generated by using a MATLAB program designed by Emma Jaervinen at KIT/NCAR. -
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ATLAS (Automatically Tuned Linear Algebra Software) provides highly optimized Linear Algebra kernels for arbitrary cache-based architectures. ATLAS provides ANSI C and Fortran77 interfaces for the entire BLAS API, and a small portion of the LAPACK AP
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J-ICE stands for Jmol interface for crystallographic and electronic properties. Is an extension of the powerful, platform independent molecular visualizer Jmol, towards crystallographic and electronic properties. More info will be given soon.
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
...https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution. VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. ... -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
.... ----- PBHoney ----- Read The Paper http://www.biomedcentral.com/1471-2105/15/180/abstract PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. -
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ICE (Interval Calculator for Engineer)
Interval Calculator for Engineer
ICE is a simple mathematical calculator with very useful shortcuts for Engineer: works natively with tolerance, can run Monte Carlo analysis, uses engineer notation, includes most of the day by day functions used by engineers. -
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Rigs of Rods
A 3D simulator game where you can drive, fly, and sail
Rigs of Rods is a 3D simulator game where you can drive, fly and sail various vehicles using an accurate and unique soft-body physics engine. Since 2014, the development continued at https://github.com/RigsOfRods/rigs-of-rods UPDATE: 10/30/2016: removed opencandy installers, replaced with zip files. -
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Control Techniques Software
CT Soft is software designed to be used with Control Techniques Drives
CTSoft can be used for configuring the following drives: Digitax ST Base Digitax ST Indexer Digitax ST Plus Digitax ST EZMotion FXMP25 Field Controller Mentor MP Unidrive 'Classic' in open-loop, closed-loop vector and servo modes Unidrive SP open-loop, closed-loop vector servo modes and regen mode Commander SK drives Commander GP20 Drive in open-loop, closed-loop vector Unidrive ES open-loop, closed-loop vector and servo modes Unidrive PV CTSoft system requirements: Pentium... -
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bta-image-model
A simple approach to modelling images provided by BTA 6-m telescope
This is a simple image modelling soft for 6-m telescope BTA with mirror aberrations and masking (to model hartnmannograms). -
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NiCE
Modeling and Simulation made NiCE!
Notice! This project is now the Eclipse Integrated Computational Environment (ICE)! The new project page is www.eclipse.org/ice and the updated source code is at www.github.com/eclipse/ice . Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes. -
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ICE Nigeria
Nigerian component of the International Corpus of English
This is the Nigerian component of the International Corpus of English, a one million word corpus of written and spoken Nigerian English for linguistic research. It can be used as a stand-alone corpus or in conjunction with other components of the International Corpus of English (such as ICE-GB, ICE-India, etc.) to compare international varieties of English. This is the first release of the complete corpus. The corpus can be downloaded in several parts. The written part can be downloaded as text files, xml files and xml files with parts of speech tagging, both with or without the raw files. For the spoken part the eaf files (ELAN files in xml format) together with the text files can be downloaded separately from the sound files. ... -
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SoftSV
Calling structural variations. The soft way.
SoftSV is a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data. It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads. For more information about the algorithm and an evaluation, have a look at this publication: "Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms" (PMID 25998133) Please cite this artilce if you used SoftSV in your publication.
