Showing 9 open source projects for "mzxml"

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  • 1
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 77 This Week
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  • 2
    Comet MS/MS search engine

    Comet MS/MS search engine

    Comet open source tandem mass spectrometry (MS/MS) search engine.

    September 2021: the code repository has migrate to https://github.com/UWPR/Comet Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS database search. Supported input formats are mzXML, mzML, ms2, and Thermo RAW files. Supported output formats are tab...
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    Downloads: 12 This Week
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  • 3
    A library for reading Mass Spectometry files. Reuse mzXML converter code but compile with gcc and Qt instead of MSVC. Some features have been added, e.g. UV scan reading
    Downloads: 0 This Week
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  • 4
    Maltcms
    The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
    Downloads: 8 This Week
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  • Fleet Management Software Icon
    Fleet Management Software

    Tracx Trucking Management Software provides the best for trucking companies looking for insight on their trucking dispatch company.

    Tracx TMS is a cloud-based, web and desktop solution for brokers and dispatchers to manage assigned drivers and loads. The platform offers invoice control, management of account receivable and payable, load status tracking, assign drivers to loads and track fuel cards. Additionally, Tracx TMS offers GPS integration allowing users to see trucks on the dispatching map.
  • 5

    MS2Browser

    LC-MS/MS data browser designed for siderophore analysis

    MS2Browser is a tool for interactive pre-processing, analysis and visualization of LC-MS/MS data. Input is an mzXML file with centroided LC-MS/MS data. The program is written in MatLab and it was designed for the analysis of siderophores (iron transporting small molecules) in bacterial media. Some of the functionality and use of MS2Browser is described as part as an open-access book chapter: http://www.intechopen.com/books/applications-from-engineering-with-matlab-concepts/small-molecule-lc...
    Downloads: 0 This Week
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  • 6
    iMet-Q (intelligent Metabolomic Quantitation) is an automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. It has a complete quantitation procedure for noise removal, peak detection and peak alignment. In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv...
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  • 7
    BiMS

    BiMS

    BiMS (biclustering for mass spectrometry data) is a Java application d

    BiMS (biclustering for mass spectrometry data) is a Java application designed to allow the application of biclustering algorithms to mass spectrometry datasets. Users can load their MS datasets and apply different clustering and biclustering algorithms (current version includes Bimax and BiBit). In adition, users can load raw datasets (in mzML or mzXML formats) and preprocess them using MALDIquant package and MassSpecWavelet.
    Downloads: 0 This Week
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  • 8
    Spectre for mass spectrometry. (Quantitiave) analysis of multiple ls-ms(ms) runs, using mzXML import of raw data. (working on mzDATA). Provides filters, alignment- and export tools.
    Downloads: 0 This Week
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  • 9
    PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format
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  • currIQunet - Curriculum Management, Higher Education Software Icon
    currIQunet - Curriculum Management, Higher Education Software

    For Education institutions and teachers looking for a curriculum management solution to design, build, and manage their curriculum

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