Search Results for "mixture"
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Showing 27 open source projects for "mixture"
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Armadillo
fast C++ library for linear algebra & scientific computing
* Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads:... -
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CFD Utilities
CFD-related Fortran libraries and applications
UPDATE: As of March 2023, the CFDTOOLS project has moved its public repository to NASA's official organization on GitHub: https://www.github.com/nasa/cfdtools While this repository will remain available, it will no longer receive updates or be monitored for issues. Please see the link above for latest releases and issue status. ---- The CFD Utility Software Library (previously known as the Aerodynamics Division Software Library at NASA Ames Research Center) contains nearly 30... -
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MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. * More info + downloads: https://mlpack.org * Git repo: https://github.com/mlpack/mlpack
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TPLS
High Resolution Direct Numerical Simulation (DNS) of Two-Phase Flows
TPLS is a powerful and efficient 3D Direct Numerical Simulation (DNS) flow solver to simulate multiphase flows at unprecedented detail, speed and accuracy. This flow solver has been developed by Lennon Ó Náraigh (Mathematical Sciences, University College Dublin), Prashant Valluri (Engineering, University of Edinburgh), David Scott, Toni Collis and Iain Bethune (EPCC at the University of Edinburgh) and Peter Spelt (Université de Lyon1, Claude Bernard) under the aegis of several HECToR /... -
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SMTracker (v1.5, v2.0)
A tool for analysis and visualization of single-molecule tracking data
SMTracker v2.0 is a MATLAB-based graphical user interface (GUI) for automatically quantifying, visualising and managing SMT data via five interactive panels, allowing the user to interactively explore tracking data from several conditions, movies and cells on a track-by- track basis. Diffusion parameters and motion behaviour is analysed by several methods: a) by a Gaussian mixture model ,or b) by using the cumulative probability distribution of square displacements, c) Mean-Squared displacement fits, d) by Jump Distance analysis. It also includes exploratory tools to visualise single trajectories or dynamic heat maps. -
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Polluted gases Estimator
Create, estimate and analyses gas pollutants and the possible costs
The SPS machines are not designed to filter the particulates to be of acceptable size, level or concentration, unlike Wet Scrubbers, Electrostatic Precipitators, Diesel Particulate Filter DPF etc. The reality is that finest and ultra-finest Particulates tends to behave like gas rather than a gas-solids mixture or simply can be transported by vapour. Is the reason why many filtering technologies are ineffective. However, SPS technology is post-combustion system or last stage of production, which results in packaged CO2 or any other gases, without worrying about gas dilution and intrusion processes which more complicated and costly also are not well investigated, that is a setback for many CO2 technology. ... -
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Mixture100
Simply percent calculator
For making various mixtures, like homemade alcohol, brine or e-liquids. Add a components, set a percentage in total, set how much I want a given mixture and save, share or print recipe. -
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Accord.NET Framework
Scientific computing, machine learning and computer vision for .NET
The Accord.NET Framework provides machine learning, mathematics, statistics, computer vision, computer audition, and several scientific computing related methods and techniques to .NET. The project is compatible with the .NET Framework. NET Standard, .NET Core, and Mono. -
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mixture fraction
Calculate mixture fraction field in OpenFOAM
A small flexible library plugin to calculate mixture fraction from species fields in OpenFOAM. -
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jLDADMM
A Java package for the LDA and DMM topic models
The Java package jLDADMM is released to provide alternative choices for topic modeling on normal or short texts. It provides implementations of the Latent Dirichlet Allocation topic model and the one-topic-per-document Dirichlet Multinomial Mixture model (i.e. mixture of unigrams), using collapsed Gibbs sampling. In addition, jLDADMM supplies a document clustering evaluation to compare topic models. See the usage of jLDADMM in its website at http://jldadmm.sourceforge.net/ -
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fitGCP
Fitting genome coverage distributions with mixture models
...fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Please find the accompanying paper here: http://dx.doi.org/10.1093/bioinformatics/btt147 -
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BiomeNet
BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES
...To infer the structure of community-level metabolic interactions, BiomeNet applies a mixed-membership modelling framework to enzyme abundance information. The basic idea is that the mixture components of the model (metabolic reactions, subnetworks, and networks) are shared across all groups (microbiome samples), but the mixture proportions vary from group to group. Through this framework, the model can capture nested structures within the data. BiomeNet is unique in modeling each metagenome sample as a mixture of complex metabolic systems (metabosystems). -
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OrthoRBH
Rapidly identify orthologous cDNA sequences in related species
...It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis. -
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MCTIMME
Microbial Counts Trajectories Infinite Mixture Model Engine
MCTIMME is a nonparametric Bayesian computational framework for analyzing microbial time-series data.The current implementation is in Matlab. -
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GenoTan identifies inherited variation of microsatellite loci from short sequence reads using a discretized Gaussian mixture model combined with a rules-based approach.
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The AK toolkit is another kit for building and use Hidden Markov Models (HMMs). Originally developed for handwritten text recognition (HTR) using Bernoulli HMMs, it also implements diagonal Gaussians and can be used for any other purpose.
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Adaptative thresholding for fMRI
Matlab scripts to perform cluster FDR adaptative thresholding
Matlab plug-in for SPM allowing to obtain a threshold for cluster FDR - the method fits a Gamma-Gaussian mixture model to the SPM-T and finds the optimal threshold (crossing between noise and activation). Optionally write the thresholded maps. -
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The SNOMP Library
SNOMP (SNOMP is Not OpenMP) is a library for semi-shared memory parall
SNOMP (SNOMP is Not OpenMP) is a library for semi-shared memory parallelization. -
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ESMERALDA is a development environment for statistical recognizers operating on sequential data (speech, handwriting, biological sequences). It supports continuous density Hidden Markov models, Markov chain (N-gramm) models, and Gaussian mixture models.
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This project hosts tools used for analysis of Gaussian Mixture Distributions (GMDs) which are used for statistical signal processing. The tools are libraries for implementing GMD operations and programs used to analyze properties of GMDs.
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GMM-GMR is a light package of functions in C/C++ to compute Gaussian Mixture Model (GMM) and Gaussian Mixture Regression (GMR). It allows to encode any dataset in a GMM, and GMR can then be used to retrieve partial data by specifying the desired inputs.
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This program developed into DYNAMO, the general event driven dynamics simulator. This is capable of simulating millions of particles and a huge range of complex dynamics. Please see the new website at http://www.marcusbannerman.co.uk/dynamo
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clusterviz allows to cluster three-dimensional data. The clustering process is visualized using OpenGL. As clustering algorithms the family of k-means algorithms is implemented, including mixture models.
