Search Results for "file comparison"
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Showing 25 open source projects for "file comparison"
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..., part name contained in the first three comments in the cnc program. Some EdytorNC features : bolt holes calculation; solutions of triangles calculation; speed, feed calculation; conversion inch/mm, mm/inch; code colouring; RS232 data transmission with automatic file saving and possibility to download new CNC program directly from machine (beta function, look in tool tips in serial port configuration dialog). Clipboard to keep texts from system clipboard.
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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QUAST
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. QUAST computes a number of well-known metrics, including contig accuracy, number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and in the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one... -
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Linguistic Analyzer
The Linguistic Analyzer is a tool for corpus analysis and comparison
The Linguistic Analyzer (Almuhalil Alloghawy) is a free tool designed by a team from Al-Imam Muhammad bin Saud islamic university that can be used for corpus analysis and comparison in terms of the several linguistic characteristics, such as frequency lists generation, concordances, collocation extraction, the difference between two words, and keyword identification. -
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queXC
Web based system for cleaning and classifying open text fields
An Open Source, web based data cleaning and coding system. queXC takes a data file (such as questionnaire data) and cleans the text input fields by spacing and spell checking them. Operators then code text fields using new/existing coding schemes. -
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DeepScaleTool
Estimation of deep-submicron technology scaling
DeepScaleTool is a spreadsheet based tool for the accurate estimation of deep-submicron technology (130 nm to 7 nm) scaling by modeling and curve fitting published silicon trends for area, delay, and energy. The tool is also helpful to conduct fair comparison of the circuits' performance, energy, and power dissipation across different technology generations. Please make sure you enable macros while opening the DeepScaleTool.xlsm file. This tool was developed by Satyabrata... -
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Open Source Data Quality and Profiling
World's first open source data quality & data preparation project
This project is dedicated to open source data quality and data preparation solutions. Data Quality includes profiling, filtering, governance, similarity check, data enrichment alteration, real time alerting, basket analysis, bubble chart Warehouse validation, single customer view etc. defined by Strategy. This tool is developing high performance integrated data management platform which will seamlessly do Data Integration, Data Profiling, Data Quality, Data Preparation, Dummy Data... -
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MoCalc2012
GUI for MOPAC, DFTB+, GAMESS, Firefly, NWChem, ORCA and PSI4
MoCalc2012 is a simple, efficient Graphical User Interface for MOPAC, DFTB+, GAMESS(US), Firefly, NWChem, ORCA and PSI4. -
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Ghawwas_V4
An open source system for Arabic corpora processing
Ghawwas (previously known as Khawas) is an open source system for Arabic corpora processing. Ghawwas V4.0 provides the following main functions: a. Frequency list for single word and N-Grams b. Concordance c. Collocation (MI, CHI Squared, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient) d. Lexical patterns search e. Two corpora frequency profile comparison based on MI, CHI, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient f. Accept Windows and UTF-8 character... -
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Kinannote
Protein Kinase Identification and Classification
Kinannote identifies and classifies protein kinases in a user-provided fasta file using an HMM derived from serine/threonine protein kinases, a position specific scoring matrix derived from the HMM, and comparison with a local version of the curated kinase database from kinase.com. If the user inputs a complete proteome, additional modules evaluate the completeness of the kinome and place it in context with reference kinomes. Kinannote runs on a unix command line and depends on local hmmer 2... -
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Priority Estimation Tool (AHP)
PriEsT is a decision making tool for Analytic Hierarchy Process (AHP).
...:- Siraj, S., Mikhailov, L. and Keane, J. A. (2015), "PriEsT: an interactive decision support tool to estimate priorities from pairwise comparison judgments". International Transactions in Operational Research. 22: 217–235. doi:10.1111/itor.12054 -
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ISVASE
identification of sequence variant associated with splicing event
To generate correct mature mRNAs, the exons must be identified and joined together precisely and efficiently by RNA splicing mechanism. It is to be noted that about one third or a half of all disease-causing mutations effect RNA splicing. However, there is little bioinformatics tools to directly identify sequence variants associated with splicing events (SVASE) based on RNA-seq data. We developed ISVASE, a simple and convenient tool for identifying SVASE directly using RNA-seq data.... -
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RGAAT
Reference based genome assembly and annotation for new genome
This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format). -
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Heat transfer performance
Program to monitor heat exchangers units in industrial plants.
... and condensing temperature specifically for steam. All data are recordes in the database. The program provide very useful tools: - graph behaviour from a single parameter up to all parameters toghether for comparison. - it is provided the possibility to show the graph for the plant or restricted to a specific cooling tower or a single unit. A list of all data is also provided. Some instructions are included in the main menu. Improvement needed is mainly the building of distribution package -
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Adaptive Gaussian Filtering
Machine learning with Gaussian kernels.
Libagf is a machine learning library that includes adaptive kernel density estimators using Gaussian kernels and k-nearest neighbours. Operations include statistical classification, interpolation/non-linear regression and pdf estimation. For statistical classification there is a borders training feature for creating fast and general pre-trained models that nonetheless return the conditional probabilities. Libagf also includes clustering algorithms as well as comparison and validation... -
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Coulson Plot Generator
Graphics generator for pie diagram matrix from spreadsheets
For comparative plus/minus spreadsheet data, Coulson Plot Generator application creates a multiple pie diagram, for a rapid visual comparison of subunit occupancy across a range of entities. Numbers of pies, segments, labels and colours are customisable. Creates an editable PDF from a comma separated text file. Now with zoom capability and more memory, for larger datasets. Save images in several formats including SVG. -
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Botnet Detectors Comparer
Compares botnet detection methods
Compares botnet detection methods by computing the error metrics by reading the labels on a NetFlow file. The original NetFlow should have a new column for the ground-truth label, and a new column with the prediction label for each botnet detection method. This program computes all the error metrics (TPR, TNR, FPR, FNR, Precision, Accuracy, ErrorRate, FMeasure1, FMeasure2, FMeasure0.5) and output the comparison results. It also ouputs a png plot. The program can compare in a flow-by-flow... -
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AGNES Cluster identification
R script to run several clustering algorithms using morphometric data
...-Means. For comparison, k-Means is also run on the nest means (without preceeding LDA). Cluster assignment is summarized in an output file for all three methods. -
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BreezyCalc
An algebraic, logarithmic, and trigonometric calculator for Windows.
... precision - Wide range of mathematical functions - (NEW) Geometric Formulas (like distance and volume) - User Variables - User Linear Functions - Can export session log to text file. - Conditional Statements: ---- Ex. (condition) ? (true val) : (false val) - Logic Operators: ---- && (and), || (or) - Comparison Operators: ---- <= (less than or equal to) ---- >= (greater than or equal to) ---- < (less than), > (greater than) ---- != (not equal to), == (equal to) -
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FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.
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DASS-GUI is a graphical user interface for pattern search in non-sequential data.
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Optex Analyzer is a software to analyze and compare algorithms to solve approximately optimization problems. It has a GUI that allows select a set of input files containing raw algorithm results. The analysis is shown with tables and charts.
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brillouin dataview allows quick browsing and convenient comparison of scientific data files by displaying thumbnail graphs and recorded parameters directly in the windows file explorer.
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Paired Sequence File Comparison
Fast validation of FASTQ files containing paired-end reads
For a summary and user's guide, please see the Wiki page: https://sourceforge.net/p/psfc/wiki/Home/ The Wiki page can also be accessed via the top toolbar. -
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Ekstasis
A digital signal processing (DSP) framework (w/ audio to midi focus)
..., currently only real part), detecting the presence of an event within a data segment/packet via normalized spectral signature matching/comparison, and the generation of a midi file from the detection of said patterns (i.e., event occurrences) as output are currently available.
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