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Showing 108 open source projects for "define"
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PyMC
Bayesian Modeling and Probabilistic Programming in Python
PyMC is a Python library for probabilistic programming focused on Bayesian statistical modeling and machine learning. Built on top of computational tools like Aesara and NumPy, PyMC allows users to define models using intuitive syntax and perform inference using MCMC, variational inference, and other advanced algorithms. It’s widely used in scientific research, data science, and decision modeling. -
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OpenLayers
A high-performance, feature-packed library for all your mapping needs
OpenLayers makes it easy to put a dynamic map in any web page. It can display map tiles, vector data and markers loaded from any source. OpenLayers has been developed to further the use of geographic information of all kinds. It is completely free, Open Source JavaScript, released under the 2-clause BSD License (also known as the FreeBSD). Pull tiles from OSM, Bing, MapBox, Stamen, and any other XYZ source you can find. OGC mapping services and untiled layers also supported. Render vector... -
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OctoPrint
OctoPrint is the snappy web interface for your 3D printer
...Take a look at the integrated GCODE visualizer to see a rendition of the GCODE you are currently printing. Keep an eye on the temperatures of your hotends and print bed and adapt them on the fly. Move the print head along all axes, extrude, retract or just define your own custom controls. -
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Symbolics.jl
Symbolic programming for the next generation of numerical software
Symbolics.jl is a high-performance symbolic computation library for the Julia programming language. It enables users to define, manipulate, and analyze mathematical expressions symbolically, with strong support for symbolic differentiation, simplification, equation solving, and code generation. Designed for use in scientific computing, machine learning, and engineering, Symbolics.jl integrates smoothly with Julia’s numerical ecosystem, allowing symbolic expressions to be compiled and optimized for high-speed evaluation. -
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CRC RevEng
Arbitrary-precision CRC calculator and algorithm finder
CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 113 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams'... -
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RSM
Radiation Spectrum Method : a modal BPM (Beam Propagation Method)
...It makes use of an EigenMode Expansion method (EME) to solve the electromagnetic problem. This software running on Windows and MacOS comes with a GUI that permits to define with the aid of files or scripts the arbitrary and complex geometry of the waveguide. Of that way any waveguide geometry can be handled. Several plots are available : refractive index plot, field propagation plot and modes spectrum plot. This permits, with the interpretation of the guided and radiation modes spectrum, a physical understanding of the propagation mechanisms in the integrated optical device under evaluation. ... -
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1. flattenverilog : Flattens the specified verilog module by removing the hierarchies. It works both for RTL and netlist. 2. preprocessverilog : Verilog Preprocessor to resolve macros like nested `ifdef , `define 3. createhierarchy : Verilog Hierarchy Creation Tool to group a list of instances in RTL or enlist. This creates a new wrapper by encapsulating the instance 4. flatteninstances : Flattens the given list of hierarchical instances- this removes hierarchy by pulling the contents in the higher leve 5. removehierarchy : Verilog Hierarchy Removal Tool to ungroup all the instances in a given module 6. comparemoduleinterfaces - Diff module ports and parameter. ...
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Text File Generator
Generate large text files for various testing purposes
Generate large text files with dummy data (i.e. for performance testing an app that needs to read a file). This is a console app. It allows to generate large files (you can specify the size in megabytes). There is a template which you can set to define how a single line should look like, e.g. you can make a CSV file from it. This can contain random words, random numbers and sequential numbers. It has a dictionary of English words which you can replace with your own set. You can make them repeat occasionally. -
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Ignition tag generator
Generate tags for Ignition 8.1.X
This tool is a lightweight Java-based generator that creates JSON files with a hierarchical Folder/UDT/Tag structure. It’s designed to help you quickly populate your Ignition tag system by pre-defining common tag properties. With an easy-to-use Swing interface, you can build and manage your tag hierarchy, then export it as a ready-to-import JSON file. Requires Java 8 or later. Make sure JAVA_HOME or PATH includes your Java directory. No affiliation with Ignition/I.A. -
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BIGSdb
Software for storing and analysing bacterial sequence data
...Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. These loci can be further organised into schemes for isolate characterisation or for evolutionary or functional analyses. See Jolley and Maiden 2010, BMC Bioinformatics 11:595 (http://www.biomedcentral.com/1471-2105/11/595). ... -
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SimpleDCS is a Distributed Control System made easy - fully configurable both on hardware and a software level. Experimental stage (alpha)
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AstroDB
A tool for planning and logging your astronomical observations.
With this tool you can manage your equipment and plan and log your observations. You can create a logbook (as a PDF) from your logged observations. -
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genppi
GENPPI: standalone software for creating protein interaction networks
...Our software is compelling because the interaction networks that it creates reflect evolutionary relationships between species and obtained in Average Nucleotide Identity (ANI) analyzes. Also, It allows the user to define how he intends to explore the PP and CN characteristics through various parameters that let on the creation of customized interaction networks. For instance, one can set parameters regarding the genus, metagenome, or pangenome. In addition to the parameterization of GENPPI, it is also the user's choice what set of genomes he is going to study. ... -
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HikePreparator
Create, edit view GPX tracks (in the background - online maps)
The program is used to create, view and edit tracks(trk) and additional points (wpt) defined in files in GPX format at the background of maps available on the Internet (or locally). You a free to choose map provider, or to define new (local) provider or to use you own background map. It is also used to prepare a hike based on the track - calculate the length, time of passage, add comments, divide the track into stages, prepare a report on (selected) track points, etc. It also has a module for a map printing (also with the track(s)) ,also rotated, as well as the ability to semi-automatically print a series of maps along the track. -
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ECTk
ECTk - The electrochemical tool kit
ECTk, the electrochemical tool kit, is a command line based application built on Tcl. It allows to define electrochemical experiments either interactively or via a script file sourced by ECTk. Virtually any potensiostat can be driven, the only condition being that the instrument has analogue inputs and outputs. ECTk is developed and maintained by the Electrocatalytic Green Engineering Group at Concordia University. ECTk communicates via any analogue IO board supported by the comedi library. ... -
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StreamAlert
StreamAlert is a serverless, realtime data analysis framework
StreamAlert is a serverless, real-time data analysis framework that empowers you to ingest, analyze, and alert on data from any environment, using data sources and alerting logic you define. Computer security teams use StreamAlert to scan terabytes of log data every day for incident detection and response. Incoming log data will be classified and processed by the rules engine. Alerts are then sent to one or more outputs. Rules are written in Python; they can utilize any Python libraries or functions. Merge similar alerts and automatically promote new rules if they are not too noisy. ... -
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MutaNET
NGS Pipeline and Automated Mutation Analysis
MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance. -
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Allelome.PRO
A pipeline to define allele-specific genomic features
Detecting allelic biases from high-throughput sequencing data requires an approach that maximises sensitivity while minimizing false positives. Here we present Allelome.PRO, an automated userfriendly bioinformatics pipeline, which uses high-throughput sequencing data from reciprocal crosses of two genetically distinct mouse strains to detect allele-specific expression and chromatin modifications. Allelome.PRO extends approaches used in previous studies that exclusively... -
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Bridge.jl
A statistical toolbox for diffusion processes
Statistics and stochastic calculus for Markov processes in continuous time, include univariate and multivariate stochastic processes such as stochastic differential equations or diffusions (SDE's) or Levy processes. -
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MSP Builder 2
Converts text files (such as csv, tsv, txt) to MSP files
Take a list from a search and how do you use that as a search. Answer: As an MSP file. But how do you make one? Answer: With this app. Convert your csv etc files to MSP. You define the relationship (the mapping) and take it from there. Includes a couple of examples. -
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simutron
AVR simulator IDE
Electronic circuit simulator. Simple environment to run and debug firmware for AVR 8-bit microprocessors. Able to run arduino firmware. Internally this program uses the open source Simavr AVR Processor Simulator (https://github.com/buserror/simavr) and wraps all its functions in a GUI shell. Setups for firmware debugging scenarios can be created dynamically. Able to run 16MHz MCU with decent set of external parts in real time. In particular this can be used for development of CNC firmware... -
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FiboSearch
Efficiently locate minumum of function of non-negative integer
Fibonacci search for functions! Given a real-valued function of a non-negative integer with one minimum at i in {0, 1, 2, ..., n} and no local minima, efficiently locate that minimum in log (n) time. -
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PC-PATR in XML
Converting PC-PATR grammars to XML
PC-PATR grammar files are plain text files. This project seeks to define an XML form for these grammar files and convert legacy grammar files to the XML form. -
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AdaAutoDiff
C++ Templates and Ada Package for Automatic Differentiation
Operators are overloaded so that a normal looking function definition provides access to not only evaluations of itself, but to evaluations of any of its analytic derivatives. Automatic differentiation means the user does not need to define the analytic expressions for all the various partial derivatives. It also means that those complex expressions are essentially calculated at compile time, and merely evaluated at runtime. First order derivatives only, forward accumulation. Choose "files" and either the "initial_submission" directory for the Ada version, or the other directory "cpp_AD" for the C++ version. -
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Peak List 2 MSP
Simple peak list to MSP file converter
Peak List 2 MSP takes your ascii mass/intensity pair list (or lists) and swaps them into MSP format (NIST standard text files for searching). It: takes lists from the clipboard (or drag and drop), sorts them by mass, normalises intensities, rejects below a cut off (that you define), adds MSP headers, puts the result back in the clipboard (or a file), has a command line interface so you can pass files in programmatically, has an api so you can call it in your own code (should you feel the urge). You: put a peak list in the clipboard from your favourite mass spec viewing software, append another list if you want (then you can merge lists together), copy-out or save the MSP that appears in the right hand box. ...
