Search Results for "linux command" - Page 98

md-utils is a set of command line tools written in C designed to perform certain operations and analysis on the molecular dynamics data. The supported operations involve trajectory coordinate transformation to the COM system, Cartesian coordinate transformation to selected internal coordinates and to projected normal mode coordinates, trajectory merging, selecting subsets of trajectory frames, selecting subsets of atoms, permuting atoms, etc. Analysis tools involve 1D, 2D and 3D data...

OPALS (OPen ALgebra Solver) is an open source program designed to make solving algebraic problems much easier. It aims to eventually provide an easy way to integrate, differentiate, and perform other complicated mathematical operations on expressions.

MicMac is a software for solving image matching problems, specially those arising in geographic context. It is highly customizable at the algorithmic level and for the data input (image format and geo-localization).

CTM, an acronym for Closure Task Manager, is a generic Web based project management system used to manage tasks and the project team for one or more genome finishing (Closure) projects.

Tremgen is a random map generator for Tremulous.

This is a project to create a compiler that converts grammars written in SRGS standard (http://www.w3.org/TR/speech-grammar/) to a graph understandable by HMM based ASR engines. Check srgs-parser.sf.net

OpenFlood is a fully dynamic 1D / 2D flood simulation engine intended to simulate fluvial and tidal flooding using the Saint Venant and shallow water equations.

Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.

This project has adopted a parser for the output of SimIt-ARM's sema_count program. It is useful to get statistically relevant information from the output of a batch run of the simulator.

Volumetric is a 3-D image processing tool. It reads point cloud data, expands it to a volumetric space with highly effective memory usage, and filter out necessary points.

Aircraft navigation receiver using software-defined radio (SDR)

In silico evolution of biochemical networks using a genetic algorithm combined with a rule-based biochemical network model.

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments, in an automatic way or drive by users.

PhantomPhysics is a physics equation solving program geared towards students in a High School physics class. This program can solve for just about any variable for any equation you might encounter in High School physics. PhantomPysics is written in Java.

IM Bot Framework is an adapter to interface console I/O programs to IM servers. The goal of this program is to allow easy development of bots in any programming language that can read from and write to stdio.

NetServTester is a small framework to test network service performance, actually there are plugins for icmp, http and ftp. The results are stored in a database

This project looks at the development of a set of generic models (box,chamber, photo-chemical trajectory) to use with the MCM (www.mcm.leeds.ac.uk). The software provides a tailored FORTRAN interface to the CVODE solver (http://www.llnl.gov/CASC/sundials

This project aim to develop a suite of tool to ease the development of ASIC/FPGA solution. The final program should be an IDE enabling the creation and specification of a project from it's start to finish.

eye-pointer is a set of libraries and programs for computer vision, especially for locating the spot on the screen you're looking at. The ultimate goal is to incorporate that facility into a pointer (mouse) driver.

GraphSpider is a pattern matcher which searches parsed text in phrase-structure tree or dependency graph format for syntactic structures matching a set of patterns in MPL, a regexp-like pattern language. Applications: information extraction, text mining.

CBOLD is a C++ framework for schematicless capture of board-level electronic designs. CBOLD replaces schematic capture EDA software in the traditional PCB design flow.

A public repository of open source scripts and small programs related to linguistics and language.

Freeode is a compiler for the SIML programming language. It is a specialized language to solve differential equations. The compiler creates a python program that uses Numpy and Scipy to do the numerical computations.

Supertagging is a process of statistical lexical disambiguation, preprocessing step to parsing, which assigns LTAG tree categories to the lexical items present in the input sentence. Thus, if the input sentence is in the form of a dependency tree, the task of the supertagger is to assign the most probable TAG family to each node and edge in the dependency tree.

Contains tools and executables for performing isoline retrieval as described in the paper: Peter Mills (2009) "Isoline retrieval: An optimal method for validation of advected contours." Computers & Geoscience, 35 (11); 2020-2031.