Search Results for "java open source" - Page 86
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Showing 16942 open source projects for "java open source"
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NanoR
R package built to analyze and compare Nanopore data
NanoR is a package for the statistical language and environment R, tested on Unix, MacOSX and Windows, that allows user-friendly analysis and comparison of 1D MinION and GridION X5 sequencing data within acceptable time frames. -
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RaspiVMC
VMC control with a Raspberry PI
Remote control of a Storkair/sehnder mechanical ventilation system (VMC) via a Raspberry Pi. This allow for the integration of the VMC in a domotica system (providing compatible domotica software) -
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YeastpRofile
Software to calculate profiles around TSS and TTS of yeast mRNAs
YeastpRofile is a portable Windows form application, written in C#, to compute the profile of a genomic variable around transcription start (TSS) and termination (TTS) sites of yeast mRNAs. The profile is obtained by calculating the genome-wide Pearson correlation coefficient (R) between the genomic variable values and the TSS (or TTS) counts at incremental shifting of transcribed strand. The data of TSS and TTS counts used to compute the profiles were taken from the work of Pelechano et al.... -
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GCB_package
Stand-alone version of the Genome Complexity Browser
This application allows observing genome rearrangements in prokaryotic genomes. It provides rearrangements frequencies profiles and genomes graph representation. -
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GUSEK provide an open source LP/MILP IDE for Win32, packing a custom version of the SciTE editor linked to the GLPK standalone solver.
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The DREAM Toolbox
The DREAM toolbox is a free open source acoustic field simulation tool
The DREAM (Discrete REpresentation Array Modelling) toolbox is a free open source toolbox, for both Matlab and Octave , for simulating acoustic fields radiated from common ultrasonic transducer types and arbitrarily complicated ultrasonic transducers arrays. The DREAM toolbox enables analysis of beam-steering, beam-focusing, and apodization for wideband (pulse) excitation both in near and far fields. -
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ExpTimer
An easy-to-use timer to facilitate complex, multi-step protocols.
ExpTimer is developed as an easy-to-use timer to facilitate complex, multi-step experimental protocols. The advantages of ExpTimer are that it takes away the fiddling around with typical lab timers, which have to be reset after each action, and at the same time it shows you what to do next. You just enter your own protocol, press “start” and you do not have to worry about timers anymore, especially when you already have your hands full with your protocol. If something goes wrong during your... -
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AnharmoniCAOS
Cagliari-Orsay model for anharmonic molecular spectra in 2nd order PT
Given dynamical coefficients and/or derivatives of the ionic potential with respect to normal (harmonic) vibrational modes, compute anharmonic energies and electric dipole-permitted transitions and intensities using nearly-degenerate perturbation theory (i.e. properly accounting for Fermi and Darling-Dennison resonances). -
Grafana: The open and composable observability platformGrafana is the open source analytics & monitoring solution for every database.
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HSRA
Hadoop spliced read aligner for RNA-seq data
HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a... -
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A key goal for NEMO is the development of a formal logic (“ontology”) to support data sharing, logic-based queries and mapping/integration of patterns across data from different labs, different experiment paradigms, and different modalities (EEG/MEG)
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MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
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MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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MATLAB Robotics
MATLAB sample codes for mobile robot navigation
MATLABRobotics is a collection of robotics-related algorithms and simulation tools implemented in MATLAB. The repository brings together a wide range of robotics functionality, including path planning, control, localization, and mapping. It provides practical algorithmic implementations such as A*, RRT, Kalman filters, particle filters, and SLAM, making it a valuable resource for students, researchers, and developers learning or prototyping robotics applications. The code is written to be... -
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ChemFormatter is add-in program for Microsoft Office. ChemFormatter automatically applies font styles in a chemical document.
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e-Species
A taxonomically intelligent biodiversity search engine
This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's. -
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Abaqus implementation (through UEL subroutine) of the incremental energy/dissipation based arc-length method. Suitable for physically non-linear, geometrically linear solid mechanics problems solved through an implicit solution algorithm. The zip file includes a read-me pdf giving information about how to use the files. The details are presented in the following paper : Author : İ. Özdemir 'An alternative implementation of the incremental energy/dissipation based arc-length control...
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Pascal libraries and components. Library for: Matrix, Matrix Math, Math & statistic, CSV, URL, Counters, dir/file scanning, file/string/… utils, progress bar, … Components: DataList, Line oriented reports, Gauge, Syllable (Italian), …
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nvdecompression
A new non-haldanian model of decompression
The model itself is described in the following article: Boudinet P. A New Dynamical Theory of Decompression. Advances in Research 17(1):1-20. 2018. It is available here: http://www.journalrepository.org/media/journals/AIR_31/2018/Nov/Boudinet1712018AIR44062.pdf We provide here a small C library corresponding to this model. -
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A command-line tool for numerical reconstruction of digital holograms (formerly known as "HoloPlay")
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High speed math parser
Expression evaluator for Delphi developers
Version 2.5 is available! The latest changes are in TFastList class. It is the secondary class intended for fast string managment. The newest TGraph component is available as well. The new ParseUtils.FindFormula method allows searching any of possible formulas within some text. Parse components are intended for Delphi developers and perform high-speed (about 10 million evaluations per second) mathematics and boolean calculations. All components are available for Delphi 6, Delphi 7,... -
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TimingDrawer
Text based timing diagram generator
This tool generates timing diagrams for documenting hardware design. It reads the description from a text file with a simple syntax. It generates vector graphic (EPS, SVG or EMF format). It can be used in command line mode or with a GUI. It is written in Python and works on any platform. -
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The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.
