Search Results for "linux command" - Page 71

ChIPOTle is a peak-finding algorithm used to analyze ChIP-chip microarray data

The EdfExplorer Software is a plugin based architecture to transport and convert EDF files (ESRF Data File) to HDF5 (Hierarchical Data Format). It allows the exchange of an entire data acquisition folder to be manipulated by common internet free tool

SUBLEQ is a machine language in which there are no opcodes, the only operation available is substract and branch if negative or zero. This project offers a virtual machine for SUBLEQ programs. The included compiler allows you to write SUBLEQ more easy.

Version 0.2 of orphaned pyLAS from google code repository. Now written as both a command line executeable and as a python class for extension/intergration with other projects.

camvox is a CSG, voxel and tool path library for generating multi-axis tool paths for milling machines.

This is a Perl module for doing snp analysis based on shotgun sequencing reads and a reference genome sequence. Its primary input is the cigar alignment format outputted from ssaha2.

This project is a python script to abstract S.M.A.R.T. messages from /var/log/messages (from the smartd daemon) into .csv file(s), one for each disk, suitable for graphing.

Tool for retrieve, via Web, statistics from bug trackers in free/open source software projects. The aim of this software is to provide researchers with statistics about bug-fixing process in a project

A family of programs for building coarse-grained models (eg. of macromolecules), manipulating them (geometrical transformations and more) and calculating their X-ray scattering patterns (1D and 2D too). Uses PVM for parallelization.

This is a neat little tool to visualize binary data in a graphical form. It's really interesting to look at different types of files.

This is a simple C# command line calculator. It evaluates arithmetic expressions and functions. Easy to extend. Features include factorials, powers, brackets, bracket normalization, polish notation, factorization, fields, and advanced error reporting.

With OSM Parser it is possible to process OpenStreetMap geodata for various purposes. For example, it can be used to extract streets or other OSM elements for user defined regions to generate a street directory.

OpenGGD aims to be a solution that centralizes the GPS information of a vehicle fleet, acting as an interface among different GPS devices or their control programs and different GIS programs

MGARCH is a software library for R-Project to simulate and estimate various MGARCH processes. This project also provides convenience tools for preparing data, summarizing and visualizing results, prediction and documentation.

NoBlast provides a new extended user friendly csv output format and offers an option to correct the statistics when split databases are used for NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx).

JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.

Console application for conversion of seismic data to wav-pcm.

Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...

The Simple Versatile Plotting (SVP) tools create camera-ready plots of performance analysis data gathered from high performance computing (HPC) applications.

mind your Project Management Process Scout links open source software to the PMI based project management by offering a site describing the PMBOK knowledge areas, by a classification of os pm software and by os documents for constituting a PMI project.

Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.

mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.

Software for simple competition robots. Includes Host (linux) and Microcontroller (AVR) Software. Robust and affordable electronics designs are also included.

A simple script to download all versions (or only the specified) of BOINC to the current directory.

Tool kit for moving KML formatted Geospatial data into and out of other GIS packages such as ESRI ArcGIS, PostGIS, etc Supports reading and writing Google Earth files via Python and other GIS packages.