Search Results for "linux command" - Page 49
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Showing 2463 open source projects for "linux command"
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is... -
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NAS-KONV
NAS-KONV delivers XSLT scripts to extract data out of ALKIS NAS files
NAS-KONV is a collection of examples, how informations could be extracted out of NAS files, using XSLT scripts. NAS is a GML3 exchange format, used by the german cadastral agencies for ALKIS®. -
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Compilation of Physics Calculators
A compliation of Physics derived claculators
A NEW GUI VERSION WILL BE RELEASED SOON! Thank you for visiting the Physics Calculator, provided by PIezoSystems Inc., please visit their company website at https://piezosystems.org. For other downloads, please visit our github page, https://github.com/PiezoSystems. We hope that you find this program useful and easy to use, for troubleshooting, please email us, contact@piezosystems.org. If any bugs were found, please email us at bugs@piezosystems.org. -
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tek
LaTeX Makefile Generator
tek generates a Makefile from a set of .tex files. It automatically converts images to the correct formats, pre-processes included files (for example, converts .gnuplot files into graphs), and handles latex options (such as bibtex). Gentoo .ebuilds are available. tek uses pconfigure to build https://sourceforge.net/projects/pconfigure/ -
Build Securely on AWS with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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FluxY
FluxY – a processing tool set for stable isotope label MS data
FluxY is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data used for metabolic flux analysis. To get started simply download and unzip the FluxY.zip file and follow the getting started document in the Instructions folder. -
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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This project is a collection of utilities to boot and flash various TI DaVinci and OMAP processors, including DSP-only, ARM-only, and ARM+DSP devices.
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RMol : SD/Molfile information in R
RMol: Transforming SD/Molfile structure information into R Objects
RMol is an R script with a collection of functions to link information of SD/Molfile structure databases with powerful graph analysis packages in R. -
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Development and support of OCFA have been discontinued. the code has moved to these github repositories: https://github.com/DNPA/OcfaLib https://github.com/DNPA/OcfaArch https://github.com/DNPA/OcfaJavaLib https://github.com/DNPA/OcfaModules https://github.com/DNPA/OcfaDoc If you are interested in contributing to ongoing work on the creation of a community maintained OCFA inspired computer forensic framework, please join the Mattock/MattockFS community page on...
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Cut Data Warehouse Costs by 54%BigQuery delivers 54% lower TCO with exabyte scale and flexible pricing. Free migration tools handle the SQL translation automatically.
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SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
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CDNSimulator provides several libraries for ns2 simulator to extend it with content delivery networks (CDN).
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aeon-framework
AEON is an Evolutionary Computation framework written in C++.
AEON is an evolutionary framework written in C++, completely object-oriented. AEON is based on a plugin architecture to allow easy integration of new Evolutionary Algorithms (EA) and encodings, and to facilitate sharing of experiments among researchers. Experiments are developed and compiled separately with respect to the main framework. AEON can be easily configured using text files to use different encodings and/or EAs on the same experiment. The framework currently supports... -
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QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
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Phage_Finder is a heuristic computer program written in PERL that uses BLASTP data, HMM results, and tRNA/tmRNA information to find prophage regions in complete bacterial genome sequences.
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compeo++
compeo++ - Manage Flytec/ Bräuniger Instruments
compeo++ is a light-weight command line tool for GNU/ Linux to interact with flight instruments made by Bräuniger/ Flytec (5020, 5030, 6020, 6030, Competino, Compeo, Competino+, Compeo+). It comes as a portable C++ application with no dependency on any other program (except the GNU/ Linux platform libraries). It aims at being easy to install, easy to run and easy to use. -
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Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
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WordSegment
wordseg project is a word segment module implemented by C#
wordseg project is a word segment module implemented by C#. It is used to segment text into tokens and to label token's attribute according its context and semantic by front-maximum matching and CRF algorithms. The following are some sentences need to be segmented: 张晓晨和付仲恺一起坐在家（西坝河东里社区）里的沙发上看非诚勿扰。 百度公司的名字源于“众里寻他千百度”这诗句。 After above sentences be segmented by wordseg, the result as follows for each sentence: 张晓晨[PER] 和 付仲恺[PER] 一起 坐 在 家 （ 西坝河东里社区[LOC] ） 里 的 沙发[PDT] 上 看 非 诚 勿扰 。... -
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CPU Balance
User-based CPU quota tool
CPU Balance is a Perl script to balance the CPU usage among users. It will allocate CPU resource to each user equally only by the command renice, no matter how many processes/threads a user runs. ################ # Basic Renice Goal ################ 1. User-based balance: every user get the same cpu percentage if they ask for more; 2. all the jobs of one user has the same NI; 3. NI of all jobs tend to move as large as possible when balanced; 4. No sudden change on NI. max... -
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SOCS
SOCS is a SOLiD read mapper with bisulfite sequencing support.
SOCS performs ungapped alignment of SOLiD (color space) sequencing reads against reference sequences. Modes are available for detecting short sequence-space variants (such as SNPs) and for detecting unlimited numbers of bisulfite-induced nucleotide substitutions for 5mC methylation studies. -
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CRFSharp
CRFSharp is a .NET(C#) implementation of Conditional Random Field
CRFSharp(aka CRF#) is a .NET(C#) implementation of Conditional Random Fields, an machine learning algorithm for learning from labeled sequences of examples. It is widely used in Natural Language Process (NLP) tasks, for example: word breaker, postagging, named entity recognized, query chunking and so on. CRF#'s mainly algorithm is the same as CRF++ written by Taku Kudo. It encodes model parameters by L-BFGS. Moreover, it has many significant improvement than CRF++, such as totally... -
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wt210tocsv
Converts Yokogawa WT210 output to easily chartable CSV format
The Yokogawa WT210 outputs a CSV file through its GPIB-USB interface. The CSV is not easily chartable in Excel/Libreoffice. This will parse the CSV in a way that makes it more easily charted. -
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Fast Alignment Search Tool for di-base reads (color-space; AB SOLiD). A complementary program for the popular Illumina read mappers mrFAST and mrsFAST.
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Powersim
Energy Estimation in SystemC.
Power/Energy simulation in SystemC. Powersim is a SystemC class library aimed to the calculation of power and energy consumption of hardware described at system level. To this end C++ operators are monitored and different energy models can be used for each data type. Powersim does not require any change in the application source code. Current version is 0.3.0. -
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RNAseqR
RNA-seq expression analysis tool
RNAseqR is designed for expression analysis of RNA-seq data, and is best suited for analysis of multiple, unreplicated libraries. It is a C++ coded program currently compiled for Linux systems. With GUI and command line interfaces, it can do log, PPM, and/or RPKM (if lengths provided) transformations, as well as, statistical analysis for differential expression, using the negative binomial cumulative distribution function (CDF) or the R test statistic introduced for EST analysis by Stekel, et al. Output allows for decisions based on CDF probabilities, top R values, or comparison of R values with randomized data. ...
