Showing 1863 open source projects for "assembly source code"

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  • 1
    Javamony

    Javamony

    A Student's Approach to the Phylogenetic Problem

    Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve...
    Downloads: 0 This Week
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  • 2

    zephyr

    Experiment automation

    ...It supports instruments from Agilent, Eco Physics, ICS Electronics, Keithley, Omega, Teledyne and other manufacturers. The script language is XML-based. Syntax highlighting is available. The source code is included in the distribution. Contact the project admin to get SVN access.
    Downloads: 5 This Week
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  • 3

    chameleon_14443

    Low-cost, ISO 14443 compliant emulator for contactless smartcards

    ! This website is discontinued ! The new, improved MiniChameleon is maintained as of January 2014 on github: https://github.com/emsec/ChameleonMini ATXmega based emulator for contactless smartcards, designed and maintained by Embedded Security Group at the Ruhr-University in Bochum.
    Downloads: 0 This Week
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  • 4

    OpenETran

    Electric power system transient simulator

    ...It is also suitable for use in substation insulation coordination. Capacitor switching, TRV, and other applicaitons may be added. EPRI originally had permission to use code from the Numerical Recipes book in LPDW. These routines have been removed in favor of GSL.
    Downloads: 2 This Week
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  • 5

    DecGPU: CUDA-based Error Correction

    The first distributed and parallel short-read error corrector on GPUs

    DecGPU (Distributed Error correction on GPUs) is a parallel and distributed error correction algorithm for large-scale short read assembly. It is implemented using CUDA C++ and MPI, running on a GPU cluster.
    Downloads: 0 This Week
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  • 6
    Climate Modeling

    Climate Modeling

    Benefit Your Learning of Climate Modeling

    The goal of this project is to provide a couple of Fortran code to those students who selected the course of "Climate Modeling" in the department of atmospheric and oceanic sciences at Peking University. 这个项目的目标是给选择“气候模拟”课程(北京大学大气与海洋科学系)的同学提供与课程学习有关的源代码程序。 We are subject to GNU/GPL license and happy to open the code to the public. 我们遵守GNU/GPL协议,并乐于开放代码给所有需要的人。
    Downloads: 0 This Week
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  • 7
    Audivolv

    Audivolv

    Artificial intelligence evolves musical instruments played with mouse

    Artificial Intelligence (AI) evolves musical instruments you play with the mouse from small blocks of Java code that operate on numbers, each block designed to keep all numbers in range -1 to 1 if they started in that range, and combinations of these evolved codes running 44100 times per second for high quality 44.1 khz audio. You can also write the Java code into its window. Uses Javassist internal compiler on the new Java code assembled by renaming variables to overlap eachother and...
    Downloads: 0 This Week
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  • 8

    pyscope

    Software oscilloscope using Python and tkinter

    Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. It has been renamed "pdatascope" to avoid a name-clash with Pyscope, a scoping package on PyPi. See https://sourceforge.net/p/pydatascope/ for the latest code.
    Downloads: 0 This Week
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  • 9
    A new floating-point arithmetic which has uncertainty-tracking and undertainty-bounding capability, and algorithms to test this arithmetic. The code is in C++ (Visual Studio Express 2008)
    Downloads: 0 This Week
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  • 10
    The fast2armc program translates source code of a counter automata model for FAST(er) tool to the ARMC prolog syntax.
    Downloads: 0 This Week
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  • 11
    MICROMECHANICS

    MICROMECHANICS

    A collection of lecture notes and accompanying code on micromechanics

    The collection MICROMECHANICS (micromechanics.zip) includes: (1) lecture notes (microbook.pdf) on the analysis of heterogeneous materials and homogenization, and (2) source codes (microcode.tar.bz2) that accompany the computational exercises in Part II of the notes. Instructions on using the codes are given in the README file of each exercise. Further instructions can be found in the file microcode.tar.bz2. The MATLAB codes are used for visualization, evaluating analytical bounds...
    Downloads: 0 This Week
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  • 12
    EpiFire GUI is a graphical user interface for simulating epidemics on contact networks (C++/Qt, available under GPLv3). For source code and the EpiFire C++ API (for programmers, also GPLv3), go to http://github.com/tjhladish/EpiFire/wiki
    Downloads: 0 This Week
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  • 13

    LabMonkey Embedded Automation Platform

    Create networks of embedded devices for data logging/automation tasks.

    LabMonkey is a collection of designs for embedded devices which can be networked together to provide a range of automation, data logging and signal processing functions. A key design objective is to use as little dedicated hardware as possible for communication between nodes in the network, and to be able to adapt the network topology in real-time so as to minimize the occurrence of collisions between packets. To achieve this, a protocol has been designed specifically for the task, and...
    Downloads: 0 This Week
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  • 14
    The project intends to create tutorial in “High-quality programming code construction”. The tutorial will introduce the reader to the contemporary principles of writing high-quality, highly reliable, easy-to-read and maintainable programming.
    Downloads: 0 This Week
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  • 15
    The Whole-Body Control framework jointly developed at Stanford University and The University of Texas at Austin provides advanced control for fixed base manipulators and is currently running on the the Meka A2 Arm and the Dreamer/Meka Humanoid robot. The code repository is hosted on Github, please go to https://github.com/poftwaresatent/stanford_wbc
    Downloads: 0 This Week
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  • 16
    HOPSA
    HOPSA, high oxygen pressure sputter automation, is a Python 3 project to control a step wise sample creation Process. Although written for this specific task it is easy to adopt for any experimental task which changes hardware parameters and waits for a specific condition before proceeding. The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator. The communication with the hardware is independent of the GUI and any number...
    Downloads: 0 This Week
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  • 17
    OPyCua

    OPyCua

    OPC UA communication stack written in python

    The goal of this project is to implement an OPC UA communication stack using the python programming language. Currently we are working on a series of articles, describing how we can use python to implement the communication stack. Some code snippets have already been written!
    Downloads: 0 This Week
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  • 18

    samsn

    A tool to handle multi-stage mass spectrometry data

    The source code for SAMSN can be found in github at https://github.com/miquelrojascherto/samsn
    Downloads: 0 This Week
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  • 19
    Australian National Corpus

    Australian National Corpus

    An ongoing project to collate and provide access to language data

    Includes • Scripts for the program/ code developed • High level architecture diagrams • Install guides for developers • Links to end user documentation on the AusNC website Note: The BSD license applies to customised plug-ins, scripts and ingest programs developed by the AusNC project team. Additional open source, 3rd party software products used by the AusNC solution are referenced on our SF wiki space.
    Downloads: 0 This Week
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  • 20

    UML 2 Statemachine for C++

    UML 2 Statemachine for C++ is a development framework with DSL support

    UML 2 Statemachine Code Generator is a developer framework for an easy implementation of statemachine based applications. Here, with this framework only one Domain-specific language (DSL) specification is necessary to create executable codes for Linux, Mac OS X, and Microsoft Windows. With this framework you save a lot of time and effort during implementation; also you have an always valid - based on a well-defined C++ standard - generated code with high quality.
    Downloads: 0 This Week
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  • 21
    EPLF

    EPLF

    Electron Pair Localization Function

    The Electron Pair Localization Function (EPLF) helps to understand chemical bonding in molecular systems. This code uses a modified formulation which allows the exact calculation of the EPLF for usual wave functions (HF,KS,CAS,...)
    Downloads: 0 This Week
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  • 22
    Blast2SNP
    The Blast2SNP is able to pick out synonymous, non-synonymous mutations and indels from draft assembly sequences by performing BLAST search against the reference ORF sequences.
    Downloads: 0 This Week
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  • 23
    Open Source Android Forensics Toolkit

    Open Source Android Forensics Toolkit

    OSAF-TK your one stop shop for Android malware analysis and forensics.

    Welcome to OSAF! The OSAF-Toolkit was developed, as a senior design project, by a group of IT students from the University of Cincinnati, wanting to pioneer and pave the way for standardization of Android malware analysis. The OSAF-Toolkit is built from Ubuntu 11.10 and pre-compiled with all of the tools needed to rip apart applications for code review and malware analysis. Our primary goal with the toolkit is to be able to make application analysis as easy as possible. We also wanted to...
    Downloads: 1 This Week
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  • 24
    ShiVaSmiles

    ShiVaSmiles

    A slick interface to see various scale analysis algorithms in action.

    The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content !
    Downloads: 0 This Week
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  • 25

    TiffToDicom

    A converter from Tiffs to Dicoms

    This is not a final version but a work in progress. I am releasing the code only in the hopes that it will be helpful. There will be further updates in the future as the project is being actively developed.
    Downloads: 0 This Week
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