Search Results for "computing" - Page 4
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Showing 551 open source projects for "computing"
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SMASH
Massively parallel software for quantum chemistry calculations
Scalable Molecular Analysis Solver for High-performance computing systems (SMASH) is massively parallel software for quantum chemistry calculations and released under the Apache 2.0 open source license. It is currently capable of energy, analytical gradient, and geometry optimization calculations of Hartree-Fock theory and Density Functional Theory (DFT), and energy calculations of Second-order Moller-Plesset (MP2) perturbation theory. -
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Toward A Philosophy Of Computing
How to philosophize with internetworked electronic computing machinery
Toward A Philosophy Of Computing begins as a dissertation proposal in Texts and Technology at the University of Central Florida that explores doing philosophy by programming. See the project wiki for the proposal. -
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SBW (Systems Biology Workbench)
Framework for Systems Biology
The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as... -
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The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.
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NESSIE is a modern first-principle calculation software that can adequately address the need for ever-higher levels of numerical accuracy and high-performance in large-scale electronic structure simulations, as well as pioneer the fundamental study of quantum many-body effects in a large number of emerging nanomaterials. NESSIE is an electronic structure code that uses a real-space FEM discretization and domain-decomposition (DD) to perform all-electron ground-state DFT and real-time...
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Qbsolv
A decomposing solver
Qbsolv,a decomposing solver, finds a minimum value of a large quadratic unconstrained binary optimization (QUBO) problem by splitting it into pieces solved either via a D-Wave system or a classical tabu solver. (Note that qbsolv by default uses its internal classical solver. Access to a D-Wave system must be arranged separately.) -
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VOX-FE
Voxel-based Finite Element Analysis for Biomechanical Applications
VOX-FE is voxel-based FE software, developed jointly between the University of Hull's Medical & Biological Engineering Research Group and Edinburgh Parallel Computing Centre, with a sophisticated graphical user interface that allows the complex loading regimes that are inevitably present in biomechanical analyses to be readily applied to the model geometry, and the resultant 3D stress and strain patterns to be visualized easily. In addition to the introduction above, several example videos are available on YouTube: https://www.youtube.com/watch?... -
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opencpnplugins
Plugins for OpenCPN
This project hosts various plugins for the OpenCPN chart plotter, which are not bundled with the core package. OpenCPN is a free software (GPLv2) project to create a concise chart plotter and navigation software, for use underway or as a planning tool. OpenCPN is developed by a team of active sailors using real world conditions for program testing and refinement. -
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Hedgehog Lab
Run, compile and execute JavaScript for Scientific Computing
Hedgehog Lab is an open-source scientific computation tool in the browser. Before the development, Pleases make sure you are already installed and enabled the yarn. Once cloned, switch to the dev branch and navigate to the folder by typing cd hedgehog-lab and then running the provided commands. On each run the program compiles and it takes time. Please wait until it shows "Compiled successfully!" and instructions about with which IP:PORT to connect. -
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PeMSyn
Matlab/Scilab-FEMM based GUI to Assist the Design of Permanent Magnet
Release: PeMSyn 2.4 - 03.Sep.21 Requirements: - Matlab 2018a or later (with Parallel Computing Toolbox ) - Scilab 6.1.0 or later - FEMM 4.2 (21Apr2019 or later) Matlab/Scilab-FEMM based GUI to Assist the Design of Permanent Magnet Machines: - Surface Mounted PMSM: Inner Rotor / Outer Rotor - Inset Mounted PMSM: Inner Rotor / Outer Rotor - Spoke-Type PMSM: Inner Rotor - Coreless Machine - Different Slot types available - Permeance Coefficient Assistant --- No-Load and On-Load estimation for PC during the design process - Winding Wizard Assistant - Performance Simulator (FEMM Based) --- No-Load and On-Load parameters assessment considering armature reaction and saturation effects --- Torque Curve Capability assessment --- Parallel Processing (Matlab only) TUTORIAL included! ... -
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QuCAT
Quantum Circuit Analyzer Tool
QuCAT stands for Quantum Circuit Analyzer Tool. This open source python library provides standard analysis tools for superconducting electronic circuits, built around Josephson junctions. QuCAT features an intuitive graphical or programmatical interface to create circuits, the ability to compute their Hamiltonian, and a set of complimentary functionalities such as calculating dissipation rates or visualizing current flows in the circuit. QuCAT currently supports quantization in the basis of... -
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Talend Spatial Module (aka Spatial Data Integrator or SDI) is an ETL tool for geospatial. Based on Talend Open Studio, input, output and transform geocomponents are available. IO components read/write GIS formats(eg.PostGIS, GeoRSS). Transformers all
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GelJ
GelJ is a Java program for the analysis of DNA gel fingerprints images
...GelJ is a feather-weight, user-friendly, open-source and free tool that combines the simple design of free systems with instrumental features for DNA fingerprinting that are only available on commercial tools. Some of the outstanding features of GelJ are functionality for accurate lane- and band-detection, several methods for computing migration models and generating dendrograms, comparison of banding patterns from different experiments, and database support. Citing GelJ: J. Heras, C. Domínguez, E. Mata, and V. Pascual. GelJ – a tool for analyzing DNA fingerprint gel images. BMC Bioinformatics 2015, 16:270 http://doi.org/10.1186/s12859-015-0703-0. You can see more information about GelJ in https://sourceforge.net/p/gelj/wiki/Home/ Several videos explaining the use of GelJ are available in https://sourceforge.net/p/gelj/wiki/Videos/ Please address any question or comment to joheras at gmail.com -
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Distributed MultiThreaded Checkpointing
Checkpoint/Restart functionality for Linux processes
...With the use of TightVNC, it can also checkpoint and restart X-Window applications. The OpenGL library for 3D-graphics is supported through a special plugin. It also has strong support for HPC (High Performance Computing) environments, including MPI and SLURM, through the github MANA project: https://github.com/mpickpt/mana -
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CS-NPSA
Nonpolar Surface Area from Continuum Solvation
The Continuum Solvation Nonpolar Surface Area (CS-NPSA) package is a general purpose program suite for defining and computing nonpolar surface areas based on continuum solvation models. It is based on the classification of individual surface elements representing the solvent accessible surface used for the description of the polarized charge density elements in the CS models. -
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Gato (Graph Animation Toolbox): Animate graph algorithms for example for computing shortest paths, minimal spanning trees, maximum flows or maximal cardinality or weight matchings. Create your own animations using the Animated Data Structures (ADS).
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Reproducible-research
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, etc.
...The workflow ensures meeting the primary goals that 1) the reporting of statistical results is consistent with the actual statistical results (dynamic report generation), 2) the analysis exactly reproduces at a later point in time even if the computing platform or software is changed (computational reproducibility), and 3) changes at any time (during development and post-publication) are tracked, tagged, and documented while earlier versions of both data and code remain accessible. -
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CAELinux
Dedicated to computer-aided engineering Linux distribution
CAELinux is an installable live (USB) Linux distribution dedicated to open source engineering with a focus on Computer Aided Engineering and Scientific Computing. Based on Ubuntu, it features a ready to use workstation environment for open source product development, makers and scientist with many CAD/CAM/CAE applications for mechanical design, stress analysis, heat transfer, flow simulation and CNC manufacturing / 3D printing as well as electronic design tools and a complete development environment for scientific computing & mathematical modeling. ... -
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This site aims to create an Enviornment for Scientific Computing on Linux by Creating a CDROM with the software for which links are provided here, Providing easy getting started guides and Creating Numerical Libraries.
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Jacksum
a free cross platform checksum utility, supports 58+ hash algorithms
...This site has been left for historical purposes ONLY, you find older Jacksum versions here. Please visit the GitHub site for current development. Jacksum 1.7.0 is a platform independent checksum utility (written entirely in Java) for computing and verifying (integrity check) checksums, CRC and hashes (fingerprints). It supports 58 popular hash algorithms and a lot of unique features. -
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ScaffCC
Compilation and optimization framework for the Scaffold language
ScaffCC is a compiler and scheduler for the Scaffold programing language. It is written using the LLVM open-source infrastructure. It is for the purpose of writing and analyzing code for quantum computing applications. ScaffCC enables researchers to compile quantum applications written in Scaffold to a low-level quantum assembly format (QASM), apply error correction, and generate time and area metrics. It is written to be scalable up to problem sizes in which quantum algorithms outperform classical ones, and as such provide valuable insight into the overheads involved and possible optimizations for a realistic implementation on a future device technology. -
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distlink
Library to compute distance between elliptic orbits (MOID)
This C++ library allows to compute the Minimal Orbital Intersection Distance (MOID) between two elliptic confocal orbits using the method by Kholshevnikov & Vassiliev (1999), Cel. Mech. Dyn. Astr., 75, 75. The implementation of the method is described in (Baluev & Mikryukov 2019), Astronomy & Computing, 27, 11. It employs numeric error control and deals carefully with nearly degenerate cases (like almost circular and almost coplanar orbits). Library also includes auxiliary functions. The code was developed and tested with GCC, though it should be usable with any other C++-compatible compiler. See README. -
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PlanetPack
Radial-velocity & transits analysis tool for exoplanets
...The description of the main theoretic concepts, statistical methods and algorithms that PlanetPack implements, is given in the following refereed papers: R.V. Baluev 2013, Astronomy & Computing, V. 2, P. 18 (initial release); R.V. Baluev 2018, Astronomy & Computing, V. 25, P. 221 (update 3.0). The technical manual explaining the details of the practical use is available in the download archive here (see the /doc/ subfolder). -
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AlienPupOS
LucidPup & SlackoPup 5.x.x with Wine & Bionc pre-installed
One persons quest to keep outdated hardware out of our landfills by putting them back in use with a modern lightweight Operating System. Linux LucidPup 5.2.8 and SlackoPup 5.3.3 have been used as the base OS for this project for two reasons, compact and portable. Both versions come in two flavors: "MeatyBones" basic barebones get the job done with Wine and Boinc pre-installed "BaconBits" which is the Flagship of this project and will come with "BoincTasks", "SetiMapView" and... -
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PMCGPU
Parallel simulators for Membrane Computing on the GPU
Membrane Computing is a new research area (within Natural Computing) that aims to provide computing devices abstracted from the functioning and structure of living cells. These devices are called P systems. The objective of this project (PMCGPU) is to bring together all the researchers working on the development of parallel simulators for P systems, specially those using the GPU (e.g.
