Search Results for "program" - Page 39
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Showing 1880 open source projects for "program"
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The C/C++ Program Perfometer is an open source tool which enables the programmer to measure the comparative performance of a C/C++ program or of separated pieces of code by one of several desired metrics: e.g., time, memory, or metrics defined by the prog
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mPSQed
Alignment editor and multiplex pyrosequencing assay designer
...The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be differentiated is high. One extremely useful but underused method for this purpose is the multiplex pyrosequencing technique. mPSQed is a program developed at the Robert Koch Institute and targeted at facilitating the creation of such assays. -
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CNViewer
CNViewer shows CNV and LOH data in affected and unaffected individuals
CNViewer is designed to allow the visual comparison of copy number (CN state) and loss of heterozygosity (LOH) data from Affymetrix SNP 6.0 microarrays between affected and unaffected members of a pedigree. The program aims to allow the identification of regions where the values of either the CN state or the LOH scores are the same in all the affected individuals, but none of the unaffected individuals have the same value. As well as visualising the CN state and LOH data, the program will also display Log(2) ratio, smooth signal and allele difference values that may also be obtained from the Affymetrix SNP 6.0 array (details on how to export the data are here). ... -
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Phage_Finder is a heuristic computer program written in PERL that uses BLASTP data, HMM results, and tRNA/tmRNA information to find prophage regions in complete bacterial genome sequences.
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The Harmony of the World
A fair attempt at the Keplerian tradition to explore the solar system
...The purpose of the programming project is as a tool to examine his system. With Java 2, it provides an open-source solution for listening to harmonies so generated by planetary motion. This program can run on any computer provided with a Java Virtual Machine (Rev 1.5 or greater). JAVA 2, system independent. Purpose:to encourage research in harmony in astronomy, math and music. Obstacles:math, DSP/synthesis, networks, astronomy. Features:audio, database, graphics Technologies: Telnet, .WAV audio, oggvorbis, other audio -
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Pontos
Pontos calculates distance matrices from DNA sequence alignments.
Pontos is an easy-to-use, graphical Java program for the calculation of uncorrected distance (or similarity) matrices from DNA sequence alignments in PHYLIP format. It also creates "difference" alignments from regular ones (and vice-versa). It can handle gaps and ambiguities in different ways. Gaps can be: - all used; - all ignored; - ignored only at the ends of the sequences, in a pairwise manner; - ignored only at the ends, but now globally (in effect trimming the whole alignment to the farthest sequences from the ends). ... -
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gvpp - Velocity Prediction Program
VPP - Velocity Prediction Program
VPP - Velocity Prediction Program - a Matlab library for sailing boat performance simulation. Based on DSYHS or user provided data. ###### A python version is currently under development and available upon request, please contact me at gianmail+gvpp@gmail.com ###### The new beta version replaces the previous alpha version after some bugs fixing and enhancements in the postprocessing output. -
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This unit conversion program is based on the latest standard of International System of Units (SI) and NIST Special Publication 811 (1995 Edition) and provides many more conversions. Licensed under GPL3. Written in Python and Qt toolkit.
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DA-EBSD
Analizing misorientation angles after EBSD Scan
The program allows you to analyze the misorientation angles obtained when using the EBSD scan. The program interface makes it easy to build a chart divided into appropriate intervals of tilt angles (eg, divided into low-angle (2-15 ˚) and of large-(over 15 ˚) limits). The ranges of angles defined by the user. Can be broken down into 3 intervals. -
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compeo++
compeo++ - Manage Flytec/ Bräuniger Instruments
compeo++ is a light-weight command line tool for GNU/ Linux to interact with flight instruments made by Bräuniger/ Flytec (5020, 5030, 6020, 6030, Competino, Compeo, Competino+, Compeo+). It comes as a portable C++ application with no dependency on any other program (except the GNU/ Linux platform libraries). It aims at being easy to install, easy to run and easy to use. It was written and tested on a two+ years old netbook. It concentrates on supporting the essential instrument management use cases: - Browse and export track logs. - Browse, export and import waypoints. - Create and browse routes. ... -
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WAP RSSI 2 ARFF
This program scans WAP RSSI readings and turns then into an ARFF file.
This program runs on a laptop with a wireless card. It scan for wireless access points (WAPs) and notes their Base Station ID or BSSID and their Received Signal Strength Indicator or RSSI. This data, along with an identifier for the physical location or 'ROOM', and the name of the computer it is being run on are stored as an ARFF file, which is compatible with programs such as WEKA and RAPIDMINER. -
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FEDES
A finite element data exchange system
FEDES is a Finite Element Data Exchange System for mapping finite element analysis data between different FE solvers and meshes with different element types and densities. Six commercial FE solvers are supported (ABAQUS, ANSYS, DEFORM, MARC, MORFEO, VULCAN). The FEA data outputted can be visualized with the open source program ParaView. -
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RNAseqR
RNA-seq expression analysis tool
RNAseqR is designed for expression analysis of RNA-seq data, and is best suited for analysis of multiple, unreplicated libraries. It is a C++ coded program currently compiled for Linux systems. With GUI and command line interfaces, it can do log, PPM, and/or RPKM (if lengths provided) transformations, as well as, statistical analysis for differential expression, using the negative binomial cumulative distribution function (CDF) or the R test statistic introduced for EST analysis by Stekel, et al. ... -
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Grafoanalizator
Graphanalyzer is an environment for visualization of graphsand process
Graphanalyzer is an environment for visualization of graphsand processes with different algorithms. Program supports about 20 algorithms. Program shows visual result of algorithm. You can solve lot of engineering tasks with Graphanalyzer. Learn more about program Graphanalyzer. Features: 1. About 20 algorithms. 2. Visualization of all the processes of graph processing. 3. Supporting helper function for graph creating as map. 4. -
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Fast Alignment Search Tool for di-base reads (color-space; AB SOLiD). A complementary program for the popular Illumina read mappers mrFAST and mrsFAST.
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Logic function minimization
Program for minimizing boolean functions not using Karnaugh K-maps
Logic function minimizer is a free open software, which is developed to solve the Digital Electronics design problems. Using Quine-McCluskey algorithm -
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Pyanpha
A python program to use multiwavelength anomalous surface diffraction
pyanpha is a shell-based program, which applies the multi-wavelength anomalous diffraction technique to Surface Diffraction. It enables one to calculate the phases of the structure factors of crystal truncation rods when anomalous scatterers are present in the thin film. Functionality extends to standalone simulations. It was coined pyanpha which is an acronym for PYthon ANomalous PHAsing and it is written in python. -
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MITSIM is a simulation-based laboratory developed for evaluating the impacts of alternative traffic management system designs at the operational level. It was developed at the MIT Intelligent Transportation Systems (ITS) Program.
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libdbase is a free C library for (USB) ORTEC digiBASE access from Linux userspace. It also includes a simple control program. The source is licensed under GPL-3 .
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JFinisher
JFinisher is software for alignment, editing and manipulation DNA seqs
JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and ability to export results in the standard formats of the area. -
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Console based notepad number cruncher makes calculations fast and simple, yet with ample features under the hood. With log turned on, you can record your session on-the-fly from any open instance of the program.
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the real name is SET(THETA)FOR. its a command line based science formulas, etc. program. French and English versions are out now. written in C... Now works with Linux and Windows!
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This program wants to simulate sand corns as real as possible. You have a sandbox which you can rotate with the cursor to see how sands falls down.
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