Search Results for "linux command" - Page 35
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Showing 2463 open source projects for "linux command"
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OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability...
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Cospace Dance
Robot for cospace dance
A complete set of code to build your own robot for cospace dance using: raspberry pi, arduino, xbee and blender, -
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This project is devoted to the development of natural language processing tools and resources for the Lingala language, which is spoken by tens of millions of people in central Africa.
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CommandCentre
Command Centre
...The Command Centre Real Time Simulation Framework (under RT Linux) allows designers to build Fast Prototyped Consoles for advanced Simulations running on Local Area Networks. -
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smalt
A mapper for DNA sequencing reads
SMALT aligns DNA sequencing reads with genomic reference sequences. It employs hashing combined with dynamic programming. -
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mPUMA
microbial Profiling Using Metagenomic Assembly
mPUMA: microbial Profiling Using Metagenomic Assembly This is a software package which was designed to allow researchers to profile microbial communities using a de novo assembly approach to form Operational Taxonomic Units (OTUs). While originally designed to support the analysis of cpn60 based amplicons, mPUMA can be used to analyze data from any suitable DNA barcode. A manuscript describing mPUMA is currently being developed and will be submitted for peer review presently. If... -
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Aelius Brazilian Portuguese POS-Tagger
Python, NLTK-based package for shallow parsing of Brazilian Portuguese
Aelius is an ongoing open source project aiming at developing a suite of Python, NLTK-based modules and interfaces to external freely available tools for shallow parsing of Brazilian Portuguese. It also includes language resources such as language models, sample texts, and gold standards. Presently, Aelius already offers facilities for POS-tagging and chunking corpora and outputting annotations in different formats, such as in XML in the TEI P5 encoding scheme. -
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ExonFinder
A pipeline to extract novel cassette exons/retained-introns
ExonFinder provides a pipeline to extract novel cassette exons and novel retained-introns from the results of mapping cross-species ESTs against a target genome via blat. -
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DeSR is a multilingual statistical dependency parser. It produces dependency parse trees for natural language sentences using a parsing model learned from annotated corpora.
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lib_data_io is a set of PHP libraries designed to easily move complex sets of data between PHP array data structures and a variety of sources and destinations including JSON, XML, ICAL, MySQL, HTML, Trac WIKI, text, LDIF, and plot images.
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dna-bison
Bisulfite alignment On Nodes of a cluster
Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the... -
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Larch: Data Analysis for X-ray Spectra
Data Processing and Analysis for X-ray Spectroscopy and More
Larch is a scientific data processing language that is designed to be easy to use for novices and complete enough for advanced data processing and analysis. Larch provides a wide range of functionality for dealing with arrays of scientific data, and basic tools to make it easy to use and organize complex data. Larch has been primarily developed for dealing with x-ray spectroscopic and scattering data, especially the kind of data collected at modern synchrotrons and x-ray sources. ... -
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OpenCFU
An application to count bacterial colonies and other circular objects
OpenCFU is a completely open source lightweight application designed to enumerate clustered circular objects such as bacterial colonies. It can handle digital pictures as well as live stream from a video device/webcam. OpenCFU is cross-platform, fast, reliable and allows the user to implement intuitive filters. Additional information is provided on the website: http://opencfu.sourceforge.net/ OpenCFU is published on PLoS... -
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ReorJS
Distributed Computing with JavaScript
Create your own distributed computer that can distributed javascript based applications to any computer with a web browser, headless browser or node.js installation. For more information and updates please see our website - http://reorjs.com. -
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metro
CLI tool that computes possible paths between two train stations
Metro is a CLI tool that computes possible paths between two stations. It is written in Perl and available under the BSD license. -
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PolySim
Polymer simulation utilites
Polymer simulation utilites for bead coarse-grained models of polymers. Includes 1) lattice monte carlo. Many kinds of lattices are supported. It shouldn't be a problem to implement any new specific one (discrete models) 2) off-lattice monte carlo and molecular dynamics (continuous models) Latter one is rebuild of earlier version of simpatico (http://gemini.cems.umn.edu/research/morse/code/simpatico/home.php) project. Input and output are based on PDB file format which is better to... -
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walterbot
walterbot: Virtual presence device www controlled with a raspberrypy
walterbot è un "virtual presence device" controllabile da remoto via interfaccia web. La distro Debian per architettura ARMhf6 è stata ottimizzata per "Raspberrypi B rev2". Il codice python scritto da Walter, controlla 2 motori DC tramite un TB6612FNG https://github.com/InformaticiTarantini/Pi-dro La distro è "out of the box" basta clonare l'immagine su una SD card (minimo 2Gb) proprio come si fa con raspbian. Tramite accesso ssh o direttamente dal raspberrypi, eseguire il comando "sudo... -
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tty2usb
Find the USB address of a USB-based serial port
Serial ports are a classic way for computers and peripheral devices to communicate. Originally modems, printers and laboratory equiptment had serial ports. The serial ports were hardware chips with known addresses. Modern computers and devices often use USB to emulate serial communications. This works well, except the device has a serial address (e.g. ttyUSB0) and a USB address. tty2usb is a utility that probe system information to display the link between USB and serial addresses. -
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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reynard
A novel universal genome assembly tool
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iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS. Current version 7.2.1 (last updated 9/30/2014) - Completes support and correction functionality for a new user specified generic data class. See the change log for full details.
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Brandy Basic V Interpreter
Brandy is an interpreter for BBC Basic
Brandy is an interpreter for BBC Basic (or Basic V) that runs under a variety of operating systems. Basic V is the version of Basic supplied with desktop computers running RISC OS. These were originally made by Acorn Computers. -
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PiSvM is a parallel Support Vector Machine (SVM) implementation. It supports C-SVC, nu-SVC, epsilon-SVR and nu-SVR and has a command-line interface similar to the popular LibSVM package.
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Network Analyzer
Analyze the network carateristics like Delay, Jitter, Packet loss etc.
This software is a very simple network analyzer. When you click the start button, it will send a configurable stream of UDP packets to a host. (The receiving host is then required to echo all the packets back to the sender, which can be easily done via iptables rule under linux). Once the eched packets arrives back to the sender, the analyzer will calculate all the related statistics like, packet loss, jitter throughput etc... NOTE: in order to receive the echo packets you must...
