Showing 1791 open source projects for "code"

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  • 1
    CellCompiler
    The target system of this project is to develop mathematically efficient program code generator from cellml like biological models described by mathematical markup languages.
    Downloads: 1 This Week
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  • 2
    MICA-aligner

    MICA-aligner

    Next-generation sequencing short reads aligner based on Intel® MIC

    Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp.
    Downloads: 0 This Week
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  • 3

    Fingerprint Recognition System

    Fingerprint Recognition System 5.3 - Matlab source code

    The proposed filter-based algorithm uses a bank of Gabor filters to capture both local and global details in a fingerprint as a compact fixed length FingerCode. The fingerprint matching is based on the Euclidean distance between the two corresponding FingerCodes and hence is extremely fast. We are able to achieve a verification accuracy which is only marginally inferior to the best results of minutiae-based algorithms published in the open literature. Our system performs better than a...
    Downloads: 0 This Week
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  • 4
    SOAP3-DP

    SOAP3-DP

    Fast, Accurate and Sensitive GPU-based Short Read Aligner

    Latest Code on GitHub: https://github.com/aquaskyline/SOAP3-dp SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously. Compared with widely adopted aligners including BWA, Bowtie2, SeqAlto, CUSHAW2, GEM and GPU-based aligners BarraCUDA and CUSHAW, SOAP3-dp was found to be two to tens of times faster, while maintaining the highest sensitivity and lowest false discovery rate (FDR) on Illumina reads with different lengths. ...
    Downloads: 0 This Week
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  • 5

    CPPQUADPACK

    C++ port of QUADPACK with general function defination style.

    ...A C++ port of QUADPACK with a general function defination style to provide more flexible function parameter defination. Based on crbond C version QUADPACK(http://www.crbond.com/scientific.htm) . You can get the latest code by : git clone git://git.code.sf.net/p/cppquadpack/code cppquadpack-code
    Downloads: 0 This Week
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  • 6
    igafem

    igafem

    Open source 3D Matlab Isogeometric Analysis Code

    ...The tight coupling of CAD and analysis within IGA requires knowledge from both fields and it is one of the goals of the MIGFEM is to provide a simple-to-understand IGA FEM code. The work is funded under the FP7 Initial Training Network Funding under grant number 289361 'Integrating Numerical Simulation and Geometric Design Technology.' If you use this code or inspired by it please cite the following reference in your work: VP Nguyen, C Anitescu, S Bordas, T Rabczuk. "Isogeometric analysis: an overview and computer implementation aspects". ...
    Downloads: 3 This Week
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  • 7
    fPotencia

    fPotencia

    Power flow library in C++

    ...Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base circuit. fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. All of them in native code and whenever possible with the same modular structure.
    Downloads: 0 This Week
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  • 8
    Advanced Normalization Tools ( ANTs )

    Advanced Normalization Tools ( ANTs )

    Multidimensional image registration, segmentation and statistics

    *** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker hub: https://hub.docker.com/u/antsx Older code and binaries remain available here on SourceForge (1.9x, pre 2014). If you are new to ANTs you should probably go to Github and get the latest code.
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    Downloads: 10 This Week
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  • 9

    MetricKnn

    Fast Similarity Search using the Metric Space Approach

    ...The intended users are software developers, academics, students and data scientist who need to efficiently compare objects according to some criteria. MetricKnn is an open source project released under the BSD 2-Clause License. The source code is available in GitHub https://github.com/juanbarrios/metricknn. For more information please visit the project's homepage: http://metricknn.org/
    Downloads: 1 This Week
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  • 10
    eANN

    eANN

    eANN is an implementation of several kind of neural networks.

    eANN is an implementation of several kind of neural networks written with the intention of providing a (hopefully) easy to use, and easy to modify, OOP source code. It is possible to have several different sized networks running simultaneously, each functioning independently of the others or acting as inputs between them. It also easy to modify the structure so that neurons (or even whole layers) can be created/pruned during simulation allowing dynamic expansion/contraction of the network.
    Downloads: 0 This Week
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  • 11
    arcgis-viewer-flex

    arcgis-viewer-flex

    Source code for ArcGIS Viewer for Flex - a great application framework

    The ArcGIS Viewer for Flex is a customizable, open-source framework for building rich GIS web applications using Adobe Flex and ArcGIS Server. It provides a modular structure with built-in map tools, widgets, and themes. Users can create interactive maps with minimal coding and extend the viewer with custom widgets for tasks like geocoding, editing, and routing. It was widely used before HTML5-based viewers became standard.
    Downloads: 0 This Week
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  • 12

    Electro-Mechanical Computer Simulation

    An electromechanical computer simulation.

    This project is a simulation of an electromechanical computer based upon the design presented in Charles Petzold's book "CODE: The Hidden Language of Computer Hardware and Software"
    Downloads: 0 This Week
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  • 13
    RoboComp
    RoboComp is a robotics framework providing a set of open-source, distributed, real-time robotic and artificial vision software components and the necessary tools to create and manage them.
    Downloads: 0 This Week
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  • 14

    wmtsa-python

    Discrete wavelet methods for time series analysis using python

    ...This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python and cython for improved performance. The code reflects my needs and preferences, but contributions from others are welcome. The code has to some extent been tested, but bugs are to be expected.
    Downloads: 0 This Week
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  • 15
    Biogenesis X Mod

    Biogenesis X Mod

    Mod of the evolution simulation and artificial life program Biogenesis

    ...Compared to the original project, this modification explores the following features: * alternative mutation mechanisms * an alternative stress-based aging mechanism It is based on the new_design branch of Biogenesis (https://sourceforge.net/p/biogenesis/git/ci/new_design/tree/), its source code can be obatained from http://sourceforge.net/p/biogenesisxmod/code/ci/xmod/tree/ If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. Biogenesis discussion forum: https://sourceforge.net/p/biogenesis/discussion/
    Downloads: 0 This Week
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  • 16

    Pathosphere

    Code supporting Pathosphere.org

    Pathosphere.org is a website designed to: Provide a means for rapid pathogen detection and characterization, and establish a more collaborative model for software development and sharing. Create an analytical environment that will enable the use of collaborators' software from anywhere, but ensure the security of analytical capabilities and data. Establish a common web front end that will capture a dynamic and changing set of analytical features. Allow users to work with the...
    Downloads: 0 This Week
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  • 17
    MSL

    MSL

    http://dx.doi.org/10.1002/jcc.22968

    MSL is a C++ library that enables the computational study of macromolecules. The MSL library is not a program (although some applications are distributed) but a tool for scientist to code their own molecular modeling methods. Philosophy The main goal is to create a set of tools that enable the computational study of macromolecules with relative ease at all levels, from simple operations (for example, load a PDB and measure a distance or edit a dihedral) to complex applications (protein modeling or design). MSL is developed in the Senes Lab at the University of Wisconsin-Madison and by a team of developers/users from other research laboratories. ...
    Downloads: 0 This Week
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  • 18
    SL2

    SL2

    SL2 (= SLSL) - A Simple Linear Systems Library

    ...It uses OpenMP for parallelization and has no other dependencies. As the name suggests, SL2's implementation is staightforward with a focus on clear concepts, easy usage and understandable code.
    Downloads: 0 This Week
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  • 19
    MDDriver
    [OBSOLETE, check Github repository: https://github.com/LBT-CNRS/MDDriver) MDDriver is a library allowing a user to easily couple molecular visualisation tools with simulation code through a network. It allows to carry out interactive molecular dynamics, visualize simulation results and drive a simulation in interactive time.
    Downloads: 0 This Week
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  • 20

    libVMR

    VMR - machine learning library

    libVMR is a class library written in Java which implements code generator for group method of data handling - GMDH. The library is intended for users, with machine learning skills. libVMR provides an effective framework for the research and development of data mining and predictive analytics. libVMR is based on the most popular neural network model with a higher generalization ability from kernel tricks - vector machine by Reshetov (VMR).
    Downloads: 0 This Week
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  • 21
    OpenWAM
    The 1-dimensional gas-dynamics code. More information in http://www.openwam.com Modeling is an important technique for the optimization of internal combustion engines (ICE). The use of calculation models together with experimental tests is producing unquestionable successes due to the fact that both techniques complement each other. 1D wave action models simplify the engine by means of ducts, where only one dimension is considered, and volumes where mass accumulation is considered and the gas properties are uniform in the entire element. ...
    Downloads: 4 This Week
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  • 22

    LWPR

    Locally Weighted Projection Regression (LWPR)

    ... [2] Stefan Klanke, Sethu Vijayakumar and Stefan Schaal, A Library for Locally Weighted Projection Regression, Journal of Machine Learning Research (JMLR), vol. 9, pp. 623--626 (2008). More details and usage guidelines on the code website.
    Downloads: 0 This Week
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  • 23
    PDSTRIP is a hydrodynamic strip code for seakeeping. It computes ship motions for monohulls including sailing boats. PDSTRIP has been abandoned by its initiators, who do not wish to be contacted with use questions. The position of maintainer is vacant.
    Downloads: 1 This Week
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  • 24

    ThermV

    Comprehensive thermal analysis software package

    ...The modules for peak deconvolution, peak profile analysis and determination of Ea and lnA will be provided first. Full GUI will be provided in beta stage. Due to computational limitations, the code is partly programmed in Python and partly in R. Python code will eventually be fully integrated into GUI. R code might remain standalone, although it will be integrated to a highest possible degree. Distributed under GPL
    Downloads: 3 This Week
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  • 25
    CGS MedRec

    CGS MedRec

    Free PHR system - Keeps your personal medical records centralized.

    ...Still, as a precaution, always backup your database file before upgrading. Also check the files section for: - The "No Administrator Rights" install version. - Portable ZIP version. - The source code. 2014-12-13 version 1.6: Check blog for changelog. Would you like to translate MedRec to your own language? Then check the translation tool in the source code zip file. You can also share the lang. XML file after in the discussion forum! Are there missing features you would like to see in MedRec? Leave a suggestion in the discussion forum!
    Downloads: 0 This Week
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