Search Results for "java projects on linux" - Page 31
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Showing 4726 open source projects for "java projects on linux"
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Virtual Cell
Former home of the Virtual Cell platform (VCell), see http://vcell.org
This project and all source code has moved to GitHub, see https://github.com/virtualcell -
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Discriminative Language Editor
Discriminative language editor based on ontologies
Text editor in Java that is able to detect discriminative expressions while the user is typing. When the internal ontology-based analyzer detects a potential discriminative expression the user is advised by underscoring the related words in the text. A descriptive message about the issue is also shown to the user when the cursor is placed over the potential discriminative expression. -
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An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
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The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
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Scommunication
Scommunication is easy to use rs232 rs485 communication application
...All sent and coming data you can see ASCII HEX DECIMAL or BINARY. With timer -- timer add after version 2-- you can send data every second , half second or how you want This application written in java(fx) so you can use windows linux or mac. Tested with arduino uno,arduino nano, arduino mega, frdm-kl46z and frdm-k64f In some problem feel free to send me mail: hrasity@hotmail.com -
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reacTIVision is a computer vision framework for the fast and robust tracking of markers attached on physical objects, and the creation of multi-touch surfaces. It was designed for the rapid development of table-based tangible user interfaces.
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CurvatureFilter
Curvature Filters are efficient solvers for Variational Models
These curvature filters were developed by Yuanhao Gong during his PhD studies. MC filter and TV filter are exactly the same as described in the paper. However, the GC filter is slightly modified. Please cite the following papers if you use a curvature filter in your work. Traditional solvers, such as gradient descent or Euler Lagrange Euqation, start at the total energy and use diffusion scheme to carry out the minimization. When the initial condition is the original image, the data fitting... -
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Identifies rRNA, contaminants, trims in a standard fashion etc. Maintains read pairs. Built for fire-and-forget high throughput projects (terabytes of data). Uses pbzip2, bowtie2, fastx_toolkit, samtools, fastqc, Trimmomatic (optional)
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Months4Mathematica
more calendar conversions, epochs, JDN, moon, +
extra astronomical / calendar / epoch features that mathematica does not have. has many new functions. supports multiple calendars (julian, gregorian, synodic, anomalistic). supports JDN conveniently, shows moon phase est. NEW: supports day number from 0 of any calendar conversion all-way between supported calendars supports multiple epochs and epoch generation. convert between some epochs without calendar support, ie, J2000.0, JDN, to some effect can create/import epochs and... -
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fNBookForm2 for Mathematica
print sci num with powers (txtbook) + read back
fNBookForm2 prints a number in Textbook Form with powers abbreviations in place of exponents (default). Output is a compressed dressed form textbooks use for significant figures tables. Easy, quality, comprehensive. booknum reads such. an important aspect is that the result maintains both accuracy and precision and has rounding control. doing this sometimees requires careful planning (error-prone complicated conversions). can read them back from textbook (into Mathematica)... -
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ThéMA libs
Commons and utils Java classes used in ThéMA projects
This project contains 7 Java libraries developped in ThéMA laboratory : - common - data - parallel - drawshape - graph - network - msca -
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Priority Estimation Tool (AHP)
PriEsT is a decision making tool for Analytic Hierarchy Process (AHP).
Priorty Estimation Tool (PriEsT) is a decision analysis tool. You can use it for ranking the options you have, or alternatively, you may use it for resource allocation (budgeting) problems. In PriEsT, you enter a list of available options and then define your criteria for prioritization. After defining criteria, PriEsT allows you to enter your judgements against each criterion, which are then used to calculate the final ranking (or weights). Please cite this if you find it... -
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yb Medical Dictionary User Customizable
java8 based yb (creator's name) medical mini dictionary with text file
As a medical blogger, I felt that there is a need for platform-independent medical dictionary. Hence 'java 8'. The dictionary must be customizable ie. user should be able to add, delete words. Hence, the use of text file for medical data, instead of xml or some database or sql or some hard-to-understand things. Java 8 can be invoked even from usb pen drives. We have used only one .java file which contains the main class. Compiling it yielded only two classes. Thus simplicity is... -
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n-chinese-remainders
chinese remainder theorem - progressive solving, n-soln, extras
"chinese remainder" solves a system of equations over modulus quickly. crtwo is an improvement to Mathematica's release. crtwo: solves Chinese Remainder a pair at a time, (uses gcd), yet is still fast. Which means crtwo, unlike text book soln, uses an algorithm to solve or fail one mod equation at a time. showing win or fail of each eqn and solving other sawtooth intersections is possible, due to that. crAll2@crtwo provides n soln near x for CR using width of soln crchart3... -
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Repast
The Repast Suite is a family of free agent-based modeling libraries.
The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have been under continuous development for over 20 years. Current source code and releases are hosted on Github https://repast.github.io/ -
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SAJaS
Simple API for JADE-based Simulations
The Simple API for JADE-based Simulations (SAJaS) is a proposal to bridge the gap between MAS simulation and development. SAJaS enhances MABS frameworks with JADE-based features. While empowering MABS modellers with modelling concepts offered by JADE, SAJaS also promotes a quicker development of simulation models for JADE programmers. In fact, the same implementation can, with minor changes, be used as a large scale simulation or as a distributed JADE system. SAJaS provides, for certain... -
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MGSyn
MGSyn - Automatic Synthesis for Industrial Automation
MGSyn (Model, Game, Synthesis) is an open-source tool which integrates game-based synthesis into model-driven development for industrial control and automation. It is served for research and educational purposes. MGSyn has been originally developed by Department of Informatics (Unit 6), TU München and fortiss GmbH and is now maintained by fortiss GmbH. The software is released under the GNU General Public License Version 3.0 (GPLv3). Please download the tutorial for step-by-step... -
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PB-sQF_BacterialTyping
Bacterial Typing from either assembled or raw short reads file
Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain. The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/). The download included the library index, the library name and sample unknowns. -
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SMT: SAR Management Toolkit
Application for managing land searches for missing persons.
Experimental application for assisting in the management of land searches for missing persons. Incorporates OpenJump for GIS rendering of segments, establishing intitial POA values for segments through consensus or mixed consensus and statistical distances, POS and POA recalculation based on PODs from applied resources, and task assignments suggested by missing person behavior profiles. -
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Entrainer is a Java program (JRE 1.8.0_40+ required, available from http://java.sun.com/javase/downloads/index.jsp) which creates binaural beat frequencies with sound, light and animations for the purpose of entraining one's brain waves.
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PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.
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MoRe4ABM
Managing Ongoing RElationships for Agent-Based Modelling
The purpose of MoRe4ABM - Managing Ongoing RElationships for ABM - is to support representing and analysing social networks in agent-based modeling. The library provides a large number of network generators and a comprehensive framework for network and node level measures. It integrates well with Repast Simphony and uses the JUNG library. More4ABM furthermore supports initialisation of geographically explicit networks using GIS. -
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Fidelity Platform Satellite Emulator
Satellite Emulator
Fidelity Satellite Emulator Description It’s a GPS / GLONASS / GALILEO / BAIDU satellite signal simulator. * Up to 128 satellites simulation; * Selection coordinates on map; * NMEA 0183 output format; * Simulation packets GGA, GSA, GSV, RMC, VTG, ZDA, GLL, HDT; * 2 methods packet generation; * Output to serial; * Output to file; COM port emulator This application tested on com0com emulator. Can be downloaded hear http://sourceforge.net/projects/com0com Libraries If you have... -
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Abc-Map
http://abc-map.fr
Tutorials and help: http://abc-map.fr New version coming soon ! https://github.com/remipassmoilesel/abcmap2
