Search Results for "tiny-workflow" - Page 3
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Showing 151 open source projects for "tiny-workflow"
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Another simpler implementation for float only uses integer types, we should use -msoft-float first or we get complex result, so we need this with huge or tiny exponents float.
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CusVarDB
CusVarDB generated variant protein database from NGS-datasets
CusVarDB is a windows based tool for creating a variant protein database from Next-generation sequencing datasets. The program supports variant calling for Genome, RNA-Seq and ExomeSeq datasets. The program performs mainly 4 modules 1. Align the datasets with reference database 2. Perform the variant calling using Genome Analysis Toolkit (GATK) 3. Annotate the variant using ANNOVAR 4. Create the variant protein database Apart from the main modules, the program also supports... -
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MLM Downline Simulator HD ➤ SWF
How to open a SWF file? Open it in a SWF PLAYER✔ or VIEWER ✔
Powered by http://www.softwaresuite.de MLM Downline Simulator HD Compensation Plan Analysis and free MLM Calculator Easy to use, just downloading the swf-file and open it in a swf-player or viewer. FREEWARE: Adobe Flash SWF file How to open a SWF file? Previously you could open all swf files in any web browser. Unfortunately, it is no longer possible. The easiest ways to open a SWF-FILES are : REQUIREMENTS ➤ Windows : ⇨ http://www.swffileplayer.com/ ➤ Mac OS : ⇨... -
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PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of... -
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TARQUIN
MRS/NMR analysis software
Analysis software for MRS/NMR data. Allows processing and fitting to be performed in a fully automatic workflow. -
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AI learning
AiLearning, data analysis plus machine learning practice
...We are also exploring other categories of open source solutions and protocols. I hope you will understand this initiative, combine this initiative with your own interests, and do what you can. Everyone's tiny contributions, together, are the entire open source ecosystem. We are iBooker, a large open-source community, we-media, and online earning community, with a QQ group of more than 10,000 people and at least 10,000 subscribers. The number of Github Stars exceeds 60k, and it ranks in the top 100 of all Github organizations. The daily up of all its websites exceeds 4k, and the peak of Alexa ranking is 20k. ... -
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Linux TinyCad
Linux tiny CAD for educational purposes
Linux TinyCad, or LiniCad, is a tiny CAD used for educational purposes. It is written in Python/Tk and its goals are to be as programmatically easy and small as possible. -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
...After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. ... -
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Command line FFT
A simple command line utility to produce an FFT/IFFT of ASCII data
Ever had a bunch of ASCII data that you would like to have a quick look at in frequency domain, but don't want to fire up some bulky analysis software package just for that? Well, I have... So I wrote this tiny tool. It is based on fftw (www.fftw.org) and boost's program options (boost.org). cli-fft is really simple: All it does is to receive ASCII data from a file or standard in, FFT it and write out the result into a file or to standard out. -
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MathFu
C++ math library developed primarily for games focused on simplicity
...Implementations are carefully tuned to leverage SIMD instruction sets such as SSE and NEON while preserving a clean fallback path for portability. Because types are fixed at compile time, the compiler can aggressively inline and unroll code, producing predictable performance and tiny binaries. The design emphasizes minimal dependencies and clear ownership so the library can be embedded into engines without dragging in heavyweight frameworks. It fits equally well in rendering math, physics helpers, animation blending, and camera control logic where determinism and speed matter. -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
...The gameplay is better experienced in 0.2 which is controlled with the mouse so you dont have enough freedom of movement compared to webcam. This small file contains its own source code including occamserver, a tiny general java server I built which I'll adjust to allow http streaming connections to stay open for faster ajax than a new web call each time. The reshaping and bouncing physics is by springs. -
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VisTrails is a new scientific workflow management system developed at the University of Utah that provides support for data exploration and visualization. Written in python, it has a visual programming interface for many libraries, including VTK.
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wxEcMath
Easy mathematics in wxWidgets
Tiny library written in C++/wxWidgets designed to manage mathematical objects : parser of expressions, plots, matrixes and complex numbers. Ansi and Unicode are supported. Documentation and rich samples are provided. Compiles with MSVC, BCC, GCC and Clang. Now on Git. -
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tiny-hyphenator
C++ Library to hyphenate a text
Use this class to achieve efficient and mostly exact word hyphenations. Currently the only language supported is German, but it can very easily be adapted to support other languages. This library spans ~370 lines of C++ code. At the moment there is no real documentation, pleas refer to the comments in the code, they should be quite helpful. A sample is also included. This library is not based on any algorithm published on the internet or elsewhere and it works without a dictionary. The... -
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OPTSYS Framework Optimization Suite
Software Framework for Combinatorial Optimization using Metaheuristics
...Aufgrund der vielfältigen Funktionen zur Evaluation eignet es sich besonders für Verfahren aus dem Bereich der Metaheuristiken und repräsentiert ein Werkzeug zur strukturierten und systematischen Lösung spezifischer kombinatorischer Problemstellungen. Es orientiert sich an dem dem Workflow zur Problemlösung und stellt für die einzelnen Schritte Rahmenbedingungen, Problemmodelle, Lösungsmethoden und eine Vielzahl an nützlichen Werkzeugen und Funktionen in Form von Plugins oder Bibliotheken zur Verfügung. -
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PopED lite
Simple, Fast, Intuitive optimal design software for preclin PKPD study
...Many of the most common models used for preclinical PKPD experiments are precoded and all you need to do is to choose the model and give some specification of the experiment you are running. This optimal design software is optimised for the preclinical experimental workflow in the pharmaceutical industry. By following five simple steps clearly outlined in the graphical user interface, you can create a report of the optimised experiment specification in a matter of ten minutes -
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The bflow* Toolbox is an open source tool kit for business process management. The objective of bflow* is to explore new ways and scenarios for the development and use of modelling tools.
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SEWOL: Security-oriented Workflow Lib
Java Library for workflow handling
SEWOL provides support for the handling of workflow traces. It allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). -
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...Create TMX databases and align translations for Translation Memory databases. Use multiple files in multiple formats to align them with their translations. The full workflow is built in with a GUI interface. SuperAlign-eAlign uses the hunalign algorithm.
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WOLFGANG
Editor for Petri nets
Wolfgang is a lightweight tool that allows users to easily create and edit Petri nets and check them against general and workflow specific net properties. Specifically, Wolfgang supports full PNML conform editing functionality of Place-Transition Nets (P/T-Nets) and Colored Petri Nets (CPN) as they are defined in the SEPIA package. Its simple and easy to use interface allows to quickly create Petri nets from scratch, edit them graphically in many ways, store and even export them as PDFs. ... -
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SEPIA: Security-oriented PN Framework
Petri net framework for security related modeling and reasoning.
SEPIA provides implementations for various types of Petri nets. Along Place/Transition-nets, it supports Petri nets with distinguishable token colors and defines coloured workflow nets, where coloured tokens are interpreted as data elements used during process execution. To support information flow analysis of processes, SEPIA defines so-called IF-Nets, tailored for security-oriented workflow modeling which enable users to assign security-levels (HIGH, LOW) to transitions, data elements and persons/agents participating in the process execution. ... -
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GASiC
Genome Abundance Similarity Correction
...You can find the accompanying paper here: http://nar.oxfordjournals.org/content/41/1/e10.short Thanks to the great work of the SeqAn team, you can now use GASiC as a Knime workflow: https://github.com/seqan/knime_seqan_workflows/tree/master/metagenomics_gasic_workflow -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs. -
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available.
