Showing 350 open source projects for "image analysis algorithm"

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  • 1
    Rainflow

    Rainflow

    Fast rainflow counting written in C (C99)

    Rainflow Counting Algorithm (4-point-method), C99 compliant. "Rainflow Counting" consists of four main steps: 1. Hysteresis Filtering 2. Peak-Valley Filtering 3. Discretization 4. Four Point Counting Method: These steps are fully documented in standards such as ASTM E1049 "Standard Practices for Cycle Counting in Fatigue Analysis" [1].
    Downloads: 0 This Week
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  • 2
    NOVA

    NOVA

    Analysis and visualization of complexome profiling data.

    ...Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. Giese, et al. NOVA: a software to analyze complexome profiling data. Bioinformatics, 2015, 31(3): 440-441
    Downloads: 4 This Week
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  • 3
    LIPRAS, Peak Fitting Software

    LIPRAS, Peak Fitting Software

    Peak fitting diffraction data

    LIPRAS v466 LIPRAS [LEEP-ruhs], short for Line-Profile Analysis Software, is a graphical user interface for least-squares fitting of Bragg peaks in powder diffraction data. For any region of the inputted data, user can choose which profile functions to apply to the fit, constrain profile functions, and view the resulting fit in terms of the profile functions chosen. If you use LIPRAS for your research, please cite it: Giovanni Esteves, Klarissa Ramos, Chris M. Fancher, and Jacob L....
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  • 4
    QtiPlot
    QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
    Downloads: 21 This Week
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  • 5
    TauFactor

    TauFactor

    MatLab App for calculating the tortuosity factor of microstructure

    Please contact the author at sjc08@ic.ac.uk for any questions or if you wish to cite this application in a academic study. Journal paper available here: http://www.sciencedirect.com/science/article/pii/S2352711016300280 TauFactor is a MatLab application for efficiently calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. The tortuosity factor quantifies the apparent decrease in...
    Downloads: 0 This Week
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  • 6
    IQM

    IQM

    Scientific Image and Signal Analysis in Java

    IQM has moved to GitHub
    Downloads: 2 This Week
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  • 7
    pyfolio

    pyfolio

    Portfolio and risk analytics in Python

    pyfolio is a Python library for performance and risk analysis of financial portfolios developed by Quantopian Inc. It works well with the Zipline open source backtesting library. At the core of pyfolio is a so-called tear sheet that consists of various individual plots that provide a comprehensive image of the performance of a trading algorithm. Here's an example of a simple tear sheet analyzing a strategy.
    Downloads: 0 This Week
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  • 8
    MORPHEUS for Fiji

    MORPHEUS for Fiji

    A tool for unbiased and reproducible cell morphometry in Fiji/ImageJ2

    ...Specifically, MORPHEUS works with sampling distributions to learn—in an unsupervised manner and by a non-parametric approach—how to recognize the cells suitable for subsequent analysis. Afterwards, the algorithm performs the evaluation of the most relevant cell-shape descriptors over the full set of detected cells. Optionally, also the extraction of nucleus features and a double-scale analysis of orientation can be performed. The whole algorithm is implemented as a one-click procedure, thus minimizing the user intervention and the ensuing biases and errors of human origin. ...
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  • 9
    LaueTools

    LaueTools

    open source python packages for X-ray MicroLaue Diffraction analysis

    LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools
    Downloads: 1 This Week
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  • 10
    SIVIC
    SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
    Downloads: 8 This Week
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  • 11

    cocolib / light field suite

    CUDA library for continuous optimization and light field analysis

    Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: documentation on the SourceForge page is outdated and not updated anymore, please visit http://cocolib.net ***
    Downloads: 0 This Week
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  • 12
    Novembre

    Novembre

    STM data analysis

    A tool for visualisation and analysis of STM and STS results. Currently supports RHK, WinSPM, Nanonis and Createc file formats. Other formats can be added. Tools are made available by plugins and are currently focused on spectroscopy manipulation.
    Downloads: 3 This Week
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  • 13

    MIPPY

    Modular Image Processing in Python

    MIPPY is a minimalistic DICOM image browser with built-in image processing modules. Its modular design means it can be extended with any number of user-created modules for image processing and analysis.
    Downloads: 0 This Week
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  • 14

    Tsf_Mdnnhn

    Time Series Forecasting.

    Implementation of algorithm allowing Time Series Forecasting.
    Downloads: 0 This Week
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  • 15
    D-Tailor

    D-Tailor

    D-Tailor: automated analysis and design of DNA sequences

    ...However, our ability to design sequences to interrogate multifactorial biological processes and further engineer biological functions is lagging behind. DNA-Tailor (D-Tailor) is a fully extendable software framework for biological sequence analysis and multi-objective sequence design. D-Tailor permits the seamless integration of an arbitrary number of sequence analysis tools into a Monte-Carlo algorithm that evolves synthetic sequences towards user-defined goals.
    Downloads: 0 This Week
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  • 16
    The main purpose of CombiTagger is to read files generated by individual PoS taggers and use them to develop and evaluate combined taggers according to a given combination algorithm. http://aaai.org/ocs/index.php/FLAIRS/2009/paper/download/67/296
    Downloads: 0 This Week
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  • 17
    Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
    Downloads: 1 This Week
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  • 18
    JPIV

    JPIV

    Particle Image Velocimetry

    JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/
    Downloads: 0 This Week
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  • 19
    D_2D and D_3D plotting programs
    D_2D and D_3D are plotting programs with unique features, useful for data visualization and analysis. Input data should be provided as ASCII files formatted as x,y pairs or x,y,z triplets. Graphic output can be in DXF vector format, or raster image.
    Downloads: 0 This Week
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  • 20
    TOFSIMS

    TOFSIMS

    R/Bioconductor toolkit for mass spectrometry data

    ...It also interoperates with Bioconductor’s imaging stack (e.g. EBImage) so users can apply segmentation and image analysis operations on mass images.
    Downloads: 0 This Week
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  • 21

    BioPPSy

    A biochemical property prediction system

    Computationally predicts the pharmacokinetic properties of drug candidates using Quantitative Structure Property Relationships (QSPR) modelling. Assembles a set of tools and databases for predicting the physical properties of small molecules. The program models a given property's dependence on a collection of molecular and structural descriptors using a training set of molecules. Neural networks and support vector regression are available, as well as linear models. The models generated by...
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  • 22
    UmUTracker

    UmUTracker

    A MATLAB program for 2D particle tracking or 3D DHM based tracking.

    We present a versatile and fast MATLAB program (UmUTracker) that automatically detects and tracks particles by analyzing long video sequences acquired by either light microscopy or digital holography microscopy (DHM). Our program finds the 2D particle center position using an isosceles triangle transform and the axial position by a fast implementation of Rayleigh-Sommerfeld numerical reconstruction algorithm using a one dimensional radial intensity profile. *Updates v1.1: 2017/11/21- Bug...
    Downloads: 1 This Week
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  • 23
    CognitionMaster

    CognitionMaster

    object-based image analysis framework

    Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34
    Downloads: 32 This Week
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  • 24
    AI learning

    AI learning

    AiLearning, data analysis plus machine learning practice

    We actively respond to the Research Open Source Initiative (DOCX) . Open source today is not just open source, but datasets, models, tutorials, and experimental records. We are also exploring other categories of open source solutions and protocols. I hope you will understand this initiative, combine this initiative with your own interests, and do what you can. Everyone's tiny contributions, together, are the entire open source ecosystem. We are iBooker, a large open-source community,...
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  • 25
    This is an IQM plugin to compute the PPI index for binary digital images. This index represents the compactness of an object. PPI is computed with the FFI index and the Lacunarity using the ToW algorithm: PPI = FFI^(Ltw) For FFI, please see: https://sourceforge.net/projects/iqm-plugin-ffi/ Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318. For Tug of War Lacunarity, please see: Reiss, Lemmerer, Hanslmeier, Ahammer Tug-of-War Lacunarity-A Novel Approach for Estimating Lacunarity. ...
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