Search Results for "evolution linux" - Page 3

This project has been moved to https://bitbucket.org/pbazant/evoversum/src/master/ . Evoversum is a fast Darwinian evolution simulator. The program simulates a 2D world populated with "animals" which struggle for food, reproduce and may also eat each other. The subject of evolution is their behavior, which may become quite complex. There is an updated video tutorial at http://www.youtube.com/watch?v=nPkZvyVDWJU !

This is a GUI, Java implementation of the Ant Colony Optimisation/Particle Swarm Optimisation (PSO/ACO2) rule induction algorithm. This project was inspired by Ant-Miner, but handles continuous attributes using PSO or now Differential Evolution.

The FAKE GAME tool uses natural evolution to evolve Data Mining models. It incorporates several preprocessing, optimization and visualization methods aimed to streamline the Knowledge Discovery process. Knowledge Extraction from data is being automated!

The Nexus Class Library (NCL) is a C++ library for interpreting data files created according to the NEXUS file format used in phylogenetic systematics and molecular evolution.

This utility, lingen, implements evolution of native machine code via linear genetic programming. The assembly level code uses a subset of assembly language which manipulates and performs calculations using the floating point unit (FPU) of the CPU.

This program is centered on a graphical Hertzsprung-Russell or color-magnitude diagram (CMD). It can show animated evolutionary tracks of stars of different masses, for a single star or a population of stars. In addition, it can show the CMD of a large number of existing open clusters, based on scientific survey data, and overlay isochrones (the curve in a CMD from stars born at the same time) to determine the age, distance and interstellar reddening of the cluster. Determining these...

Penacho calculates and draws the gas dispersion of a smokestack in the atmosphere. The plume evolution and the pollutant concentration distribution over the surrounding area can be seen in an interactive 3D graph.

This project provides the source code for the Mitochondiral Infectious Damage Adaptation (MIDA) model of aging. A probabilistic modeling approach is applied by solving the master equation in mitochondrial quality state space in the presence of fusion-fission events, decay of functional quality, mitophagy and mitochondrial biogenesis, as well as molecular damage originating from a random source or from infectious events during fusion and fission. The provided source code is written in...

AEON is an evolutionary framework written in C++, completely object-oriented. AEON is based on a plugin architecture to allow easy integration of new Evolutionary Algorithms (EA) and encodings, and to facilitate sharing of experiments among researchers. Experiments are developed and compiled separately with respect to the main framework. AEON can be easily configured using text files to use different encodings and/or EAs on the same experiment. The framework currently supports...

Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.

The goal of this project is to provide a platform for simulating biological aging and evolution of the population. The simulation is done using Penna bit-string model. Its based on the mutation accumulation theory.

Arena is a computer simulation in which programs compete for CPU time and access to main memory. Processes such as the dynamics of punctuated equilibrium, host-parasite co-evolution and density dependent natural selection are amenable to investigation.

MSR Tools is a source code evolution analysis tool. It consists of a framework for mining software repositories and tools for metric calculation, visualization, defect prediction.

SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.

We present an improved ball and stick representation called HyperBalls. This type of depiction is particularly useful to represent dynamic phenomena, such as the evolution of non covalent bonds and takes advantage of GPU capabilities. HyperBalls are now fully integrated into the UnityMol software and are actively developed in that context. You will find the most up-to-date versions of the shaders in the http://unitymol.sourceforge.net project.

Imitation of co-evolution with the populations of wolf and sheep.

Java framework to easily implement optimization problems based on evolutionary algorithms or evolution strategies and execute them in Hadoop clusters.

Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community. Maldonado E, Dutheil JY, da Fonseca RR, Vasconcelos V, Antunes A (2011) IMPACT: Integrated Multiprogram Platform for Analyses in ConTest. Journal of Heredity, 102 (3): 366-369. doi: https://doi.org/10.1093/jhered/esr003

The Mars Rover Simulator project is based on the evolutionary robotics paradigm where an artificial agent acquires its skills through the process of artificial evolution. This simulator can be useful to evolve neural network controllers for the rover

The Physics eXtension Library (PXL) is a C++ toolkit for fourvector analysis and hypothesis evolution in high energy physics data analysis.

MooGraph is an utility to produce interactive dynamical graphs from statistical data. Deliberately inspired to GapMinder, it represents the evolution of multivariate data in time by means of coloured bubbles of variable sizes on an (x,y) plot.

fick is fluid diffusion simulator (for both liquids and gases): it uses the Flick diffusion laws to drive the evolution of a cellular automata.

This is a C library with a set of functions that allow the user to evolve biological networks. The user provides a fitness function in C, and the library will do the rest. A few simulation algorithms and examples are included.

Morphid Academy is a virtual laboratory primarily for the study of evolution of physically simulated forms and their functions.

NetEvo is a programming framework designed to allow researchers to investigate evolutionary aspects of dynamical complex networks.