Showing 1827 open source projects for "source code viewer"

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  • 1
    We developed a systematic algorithmic solution for quantitative drug sensitivity scoring (DSS), based on continuous modeling and integration of multiple dose-response relationships in high-throughput compound testing studies. License: The DSS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY. In case you use the package in your work, we do appreciate a citation to a DSS publication. ...
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  • 2
    PBSuite

    PBSuite

    Software for Long-Read Sequencing Data from PacBio

    This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to...
    Downloads: 1 This Week
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  • 3
    disp2sif

    disp2sif

    Stress intensity factor (SIF) calculation from crack tip displacements

    The code implements Muskhelishvili's complex function approach to calculate 2D stress intensity factors (modes I+II) from crack tip displacement fields. Surface displacements can be used with a plane stress elastic model. The code uses power/Fourier series expansion and a conformal mapping of an ellipse onto a circle.
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  • 4

    PSICOV

    The unofficial binary for PSICOV: Protein Sparse Inverse COVariance

    PSICOV (Protein Sparse Inverse Covariance estimation program) is a coevoultion algorithm applied to very large (typically >=1000 sequences) multiple sequence alignments for precise protein structural contact prediction. This is the unofficial precompiled Windows binary for PSICOV compiled by Chengxin Zhang at Fudan University. The source code is copyrighted by David T. Jones, University College London.
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  • 5
    Colibri - The ENVI / IDL Code Library

    Colibri - The ENVI / IDL Code Library

    A collection of well documented ENVI / IDL algorithms and applications

    Colibri is a repository for source code developed in ENVI/IDL under the Open Source Initiative. It contains a wide variety of algorithms and applications which are of interest for the remote sensing community. The code is organized in a hierarchical way. At the lowest level, common code performing all kinds of basic functionality is available to the higher levels, i.e. classes and applications.
    Downloads: 0 This Week
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  • 6

    PressureEquipmentLibrary

    Library for Pressure Equipment code

    Java library for code over Pressure Equipment on European Directive or ASME BPVC
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  • 7
    Calculation of radiation view factors by adaptive integration. A cross-platform port of the public-domain code by George Walton.
    Downloads: 7 This Week
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  • 8
    F-Tracker3D

    F-Tracker3D

    A software tool for tracking fluorescent cells in 3D

    ...It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. F-Tracker3D is written in MATLAB (©, The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. ...
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  • 9
    adms
    ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators. Repository migrated to: https://github.com/Qucs/ADMS For checkout do: git clone https://github.com/Qucs/ADMS.git
    Downloads: 2 This Week
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  • 10
    INTEGRATE
    INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
    Downloads: 0 This Week
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  • 11
    StarFactory

    StarFactory

    Astrophotography

    An astronomical Open source Delphi project for : robotic telescope, autoguiding, astrophotography and advanced astronomical image processing. It is developing continuously by author. Some other astronomical test, ideas and source code => See my site for new informations (for amateur and Delphi programmers.) New: STAFImage : image process and blinkcomparator for astrophotographer Some other astronomical test, ideas and source code => See my site for new informations (for amateur and Delphi programers.)
    Downloads: 9 This Week
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  • 12
    DataShot
    Applications to support the efficient capture of data from natural science collections specimens (particularly entomological collections), by facilitating pre-capture of data reflecting the storage structure of the collection, imaging of the specimens to separate data capture from specimen handling, and community sourcing transcription of hand written label data. Designed and written by a team at the Museum of Comparative Zoology. Includes a PreCapture barcode application refactored from...
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  • 13

    Virtual Cell

    Former home of the Virtual Cell platform (VCell), see http://vcell.org

    This project and all source code has moved to GitHub, see https://github.com/virtualcell
    Downloads: 0 This Week
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  • 14
    CurvatureFilter

    CurvatureFilter

    Curvature Filters are efficient solvers for Variational Models

    These curvature filters were developed by Yuanhao Gong during his PhD studies. MC filter and TV filter are exactly the same as described in the paper. However, the GC filter is slightly modified. Please cite the following papers if you use a curvature filter in your work. Traditional solvers, such as gradient descent or Euler Lagrange Euqation, start at the total energy and use diffusion scheme to carry out the minimization. When the initial condition is the original image, the data fitting...
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  • 15
    Spglib is a C-library written for finding crystal symmetry. Symmetry operation, space group, etc, can be obtained using this symmetry finder. It is easy to include this library to your code. For more information, See, http://spglib.sourceforge.net/
    Downloads: 2 This Week
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  • 16
    GNUSim8085 is a simulator and assembler for the Intel 8085 Microprocessor. For downloading latest release please head to the website - https://gnusim8085.github.io/ For source code - https://github.com/GNUSim8085/GNUSim8085
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    Downloads: 516 This Week
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  • 17
    MieConScat
    MieConScat is a GUI/Console program for generating MIE SCATtering data as a table of cross sections. It can generate scattering cross sections over specified angular ranges and total absorption cross sections. It was initially developed to aid work with optical particle counters (OPC) especially when CONverting data between cross section and diameter space. These methods are described in Rosenberg et al. 2012, Particle sizing calibration with refractive index correction for light scattering...
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  • 18
    GBTIDL provides offline data reduction for spectral line data from the GBT, a single dish radio telescope. Although the GBTIDL code is open source, running it requires you to have your own IDL license and base package.
    Downloads: 1 This Week
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  • 19
    Repast

    Repast

    The Repast Suite is a family of free agent-based modeling libraries.

    The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have been under continuous development for over 20 years. Current source code and releases are hosted on Github https://repast.github.io/
    Downloads: 0 This Week
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  • 20
    Gimias

    Gimias

    Graphical Interface for Medical Image Analysis and Simulation

    GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.
    Downloads: 7 This Week
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  • 21
    Quantum Wells, Wires and Dots

    Quantum Wells, Wires and Dots

    A set of tools for simulating semiconductor nanostructures.

    This software accompanies the textbook "Quantum Wells, Wires and Dots" (4th Edition), Paul Harrison and Alex Valavanis, Wiley, Chichester (2015). It is adapted (by the same authors) from code that was originally supplied on a CD with the first edition of the book [1] and is now made available under the GPL3 license. In brief, we encourage everyone to use the software in your studies and research, to study and modify the source-code and to share it widely. However, you are not permitted to include any of our code in a closed-source project.
    Downloads: 5 This Week
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  • 22

    OpenShoe

    ZUPT aided INS software components for an embedded platform

    ...The initial work was primarily be carried out during the fall and winter of 2011-2012. Since then the code has been continuously updated.
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  • 23

    Ship Lock Scheduling

    Scheduling lockages at ship locks with several parallel lock chambers

    This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding...
    Downloads: 0 This Week
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  • 24
    Functy

    Functy

    Functy is a 3D graph drawing package that generates immediate results.

    Note: The Functy and libsymbolic code has now moved to GitLab: https://gitlab.com/flypig/functy https://gitlab.com/flypig/libsymbolic This project has been left here for archival purposes. Functy is a 3D graph drawing package. It allows Cartesian, spherical and parametric curve functions to be plotted and altered quickly and easily. This immediacy and the vivid results promote fun exploration of 3D function. Rendering is performed entirely on the GPU to improve visuals and...
    Downloads: 0 This Week
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  • 25
    MATSim
    MATSim is a framework for building multi-agent transport simulations. MATSim has moved to GitHub: https://github.com/matsim-org/matsim Source code and newer releases are now hosted at GitHub!
    Downloads: 2 This Week
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