Showing 4493 open source projects for "java security for linux"

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  • 1

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 2

    TEESer

    Tool for Engineering Emergent Selforganizing bEhavioR

    Teeser is a java-based integration framework for engineering emergent self-organizing behavior in distributed systems. It contains tools for analysis, tuning, macroscopic probing and simulations of distributed systems. Library of tools can be extended and everybody is encouraged to provide and share its tools with the community. The main idea is to provide application designers ability to seamlessly use tools which are helpful to design self-organizing behavior. Designers can continue to...
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  • 3
    medSLT - The Medical Speech Translator
    Downloads: 0 This Week
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  • 4
    Downloads: 0 This Week
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  • 5
    MathScythe

    MathScythe

    Math tool improving bundled calculations (like triangle properties)

    MathScythe improves bundled calculations, so you can enter what you have (like triangle's sides) and you get the rest without a blackboard and a bucket of broken chalk. App includes modules to calculate triangle, disk and directed angle's properties and it's still evolving and gaining new stuff.
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  • 6
    DACO-algorithm

    DACO-algorithm

    A novel transcription factor complex prediction algorithm.

    Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines...
    Downloads: 6 This Week
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  • 7
    An implementation of the INDI protocol in Java
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  • 8

    Ghawwas_V4

    An open source system for Arabic corpora processing

    Ghawwas (previously known as Khawas) is an open source system for Arabic corpora processing. Ghawwas V4.0 provides the following main functions: a. Frequency list for single word and N-Grams b. Concordance c. Collocation (MI, CHI Squared, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient) d. Lexical patterns search e. Two corpora frequency profile comparison based on MI, CHI, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient f. Accept Windows and UTF-8 character...
    Downloads: 1 This Week
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  • 9

    mirplant

    miRPlant: An Integrated Tool for Identification of Plant miRNA

    please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au).
    Downloads: 3 This Week
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  • 10
    DrawWKT

    DrawWKT

    View your WKT geometries

    Small and powerful! Write one or several WKT geometries on the text box, and visualize them in a click. Alternatively, draw the geometries in the drawing panel and you will have the WKT in the text box. You can also write your geometry readers and import your geometries in any format.
    Downloads: 0 This Week
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  • 11
    QualityControlForRadiology

    QualityControlForRadiology

    QC tests and patient doses from radiodiagnostic XRay equipment

    This software performs various quality control tests for XRay devices used in radiography, mammography, fluoroscopy and CT such as: HVL/tube filtration, high voltage, exposure time, tube output, MTF calculations, film sensitometry, AEC devices and more. It also compute patient doses using an external program based on the GEANT4 simulation toolkit. This program is found here: https://sourceforge.net/projects/doseinhumanbody/ Read the "README" file for details. Source code and...
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  • 12
    FunctionalCalculator

    FunctionalCalculator

    A functional maths program calculating with functions

    FunctionalCalculator is a Mathematical program, which calculates with functions and which is designed to be functional in the sense of convenience and usability. It has a desktop and a mobile edition. FunctionalCalculator has 75 User-Functions and logical / comparison operators (70 in the case of the mobile edition). The User-Functions can have arguments given by matrices, infinitely differentiable functions, complex numbers or arbitrary precision integers. Among the User-Functions you...
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  • 13
    seqMINER
    A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer
    Downloads: 3 This Week
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  • 14
    PatientKAPRecords

    PatientKAPRecords

    KAP evaluation and patient records in radiodiagnostic

    This program tries to help radiologists to keep track of patients which receive radiation doses (measured, or computed, free in air) from radiodiagnostic examinations. It performs computation of KAP (kerma-area-product if it is not recorded by a dedicated DAP-meter) and record the patient information. The program also generates elegant reports which can be converted as pdf, xls etc. Source code included in jar files. Also, available on GitHub: https://github.com/ZiliasTheSaint/PatientRxRecord.git
    Downloads: 0 This Week
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  • 15
    GMOL

    GMOL

    A tool for 3D genome structure visualization

    GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...
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  • 16
    JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
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  • 17
    Jenetics: Java Genetic Algorithm Library
    The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function. Jenetics allows you to minimize or maximize the given fitness function without tweaking it. In...
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  • 18
    Effectopedia
    Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
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  • 19
    X-RIME is a open source project devoted to provide Hadoop based solution for large scale social network analysis.
    Downloads: 0 This Week
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  • 20

    Fudaa

    https://gitlab.com/fudaa

    Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa
    Downloads: 6 This Week
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  • 21
    JLibModbus - Java Modbus Library

    JLibModbus - Java Modbus Library

    A modbus library implemented in Java.

    JLibModbus is an implementation of the Modbus protocol v1.1b in java language. The library supports the most popular communication libraries (jssc, rxtx, jSerialComm, purejavacomm, java comm api); Maven dependency: <dependency> <groupId>com.intelligt.modbus</groupId> <artifactId>jlibmodbus</artifactId> <version>1.2.9.7</version> </dependency> Implemented MODBUS functions: 0x01 Read Coils 0x02 Read Discrete Inputs 0x03 Read Holding Registers 0x04 Read Input...
    Downloads: 11 This Week
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  • 22
    Mavscript

    Mavscript

    Calculations in a text document

    Mavscript allows the user to do calculations in a text document. Plain text, LaTeX and OpenOffice Writer files (.odt) are supported. The calculation is done by the algebra system Yacas (default), Jasymca or by the Java interpreter BeanShell.
    Downloads: 0 This Week
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  • 23
    OpenStreetMap Website Viewer

    OpenStreetMap Website Viewer

    Shows local Websites from OpenStreetMap

    The OSM Website Viewer shows a Map. With + and - Button you zoom in and out. Clicking on the Map moves the clicked Point to the middle of the Map. The @ Button open your Browser an show a List of local Websites
    Downloads: 0 This Week
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  • 24
    Active Intelligence Server

    Active Intelligence Server

    Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting

    Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and...
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  • 25
    PF_HP

    PF_HP

    Prediction of proteinfolding in 2D HP model

    Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings). Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollständig. Hier implementieren wir einen brute-force Algorithmus zur Lösung kurzer Eingabesequenzen (0-1-Bitstrings) für die...
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